Vibrio atlanticus: VS_0909
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Entry
VS_0909 CDS
T00812
Name
(GenBank) transcriptional regulator, LysR family
KO
K10918
LysR family transcriptional regulator, transcriptional activator AphB
Organism
vsp
Vibrio atlanticus
Pathway
vsp05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VS_0909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vsp03000
]
VS_0909
Transcription factors [BR:
vsp03000
]
Prokaryotic type
Helix-turn-helix
LysR family
VS_0909
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
MurB_C
Motif
Other DBs
NCBI-ProteinID:
CAV17921
UniProt:
B7VL90
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All DBs
Position
1:complement(937868..938755)
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AA seq
295 aa
AA seq
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MSGFMKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLS
LTEAGERFFNECSPLLQRLSSTAEELTDVCKGASGKIRITAPSNLTKRMMMPMFSEFMTQ
YPDINIELMMNNQADQLDPTEWDVIFRVGPQRDSSLIARKISEVKDILIASPDYLAKNPA
PSHAEELANHSLLKGYPLIKWQLSNSNEETVVNSEKGRFNANALNVVRQACSEGLGITLM
PDVMIREYIEDGSLVQVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIAYHIH
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
gtgtctggatttatgaaattagatgatttaaacctctttcgacttgtcgttgaaaatggg
agctacaccgcaacatcacgcaagactatgattccggttgcgaccattacacgacgcatc
caagccttagaagattcactaaacctaagacttctcaatagacacgcgcgtaaactctct
ttaacagaggcaggcgaacgtttcttcaacgaatgctctccgttactgcaacgtctatct
tctactgcagaagaactgactgacgtttgtaaaggggcttccggtaagattcgcattacg
gcaccctcaaacctgaccaagcgcatgatgatgccgatgttcagtgaattcatgactcaa
tatcctgatattaatattgagctgatgatgaacaaccaagccgatcagcttgatccaacc
gagtgggacgtaattttcagagtaggtccacaacgtgattcaagcctaatcgctcgaaaa
atcagtgaagtaaaagatattcttatcgcaagtcctgactacttagcgaagaacccggca
ccaagtcatgcagaagagctcgcgaatcattcgctacttaaaggctatccgctgattaag
tggcagctgagtaattcgaatgaagagacggtggtgaatagcgagaaaggccgtttcaac
gcgaatgcgctcaatgtcgtgagacaagcatgttcagaaggcctcggtatcaccctaatg
cccgacgttatgatccgcgaatacattgaagatggcagcttagtgcaagtcttagaggac
tggagcgctaaccctcgtgatatctacatgctttacaaccacaaagaccacctgccagag
aaggttagattgtttatcgattttgtgatcgcataccacattcactaa
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