Vibrio atlanticus: VS_1016
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Entry
VS_1016 CDS
T00812
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VS_1016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsp03019
]
VS_1016
03009 Ribosome biogenesis [BR:
vsp03009
]
VS_1016
Enzymes [BR:
vsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VS_1016
Messenger RNA biogenesis [BR:
vsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VS_1016
Ribosome biogenesis [BR:
vsp03009
]
Prokaryotic type
rRNA processing factors
VS_1016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAV18067
UniProt:
B7VLX5
LinkDB
All DBs
Position
1:complement(1055833..1058958)
Genome browser
AA seq
1041 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERA
QAHIQLIRPDFMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVES
RLRDAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLLPTKLEALKEAESKEPAEQTIRPKKIEEPALKGFAAPAQSA
PTPAPVPKAVEEKKAESAATQEPGLVGRFFKAIGSFLFGSSTQEEKKEEEKQEEKPKNNR
NNGNRQRRDRNDNRRRNQRGDRGEQRGERGDNRNENRDNKRRRKPVRDEKPEEQKETAPQ
QNRQPRKPKQDRRNKPRDEQKQREELAPSKLAEEGLQLAAEAQADKLEAPKAKPEAKAAK
IKERRQRRKLNKQVRIKDQQAEAAENSSNESAVAKEQSIAKEQSVAQEQKVAEQVEATQA
NADEQTEQEEPKQRRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMP
RFIPKPHHNQAKPEVAEVQVAVETQVAVQEQNVAQETAPQSNSAMAGGFACPELAMGKVI
IRREEAETVVETQVTEAPAVVETEKVETPVIAETAKVESPVVAEAVQVEATPVVEAEAPK
AESVKVEEAPVVNAEAPKAAPKAAVAKKQAGSPMTKAPGPQEIKEIQVVAAPFRTERFVS
KGAGSQAASNKAGAGMTKPQY
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctttggttgat
ggccagcgactgttcgatctagatatcgaaagtccaggtcacgaatcaaagaaagcgaat
atctacaaaggacgtattacccgtattgaaccaagcctagaagcggcatttgttgattac
ggcgcagaacgtcacggtttcctccctcttaaagaaattgcccgcgaatacttccctgaa
ggttatacataccaaggccgtcctagcattaaagaagtgctaagagaaggacaagaagta
atcgtacaagttgagaaagaagaacgtggtagcaaaggcgctgcactgacaactttcatc
tctttggcgggtagttacttagttcttatgccaaataaccctcgcgctggcggtatttct
cgtcgtatcgaaggtgatgaacgcactcaactgaaagcagcattaagcactcttgagctt
cctcaaggtatgggcttaatcgtgcgtacagcgggtgtaggcaaaagtgcagaagagctt
gagtgggacttgaacgttctattgaatcactggggcgctatcaagcaagcttctgattca
aatgcagctcctttccttattcaccaagaaagtaacgttatcgttcgtgcgattcgtgac
tatctacgtcgtgatattggcgagattctaatcgacagcaatactatttttgaacgtgca
caagcgcacattcaattaatacgcccagatttcatgaatcgcgttaagaaatacgatggt
gaagtaccactattcagccattaccagattgaaagccagatcgaatctgctttccaacgt
gaagttcgtcttccatctggtggttctatcgtaatcgacccaacagaagctctgacttct
atcgatatcaactctgctcgtgcaacaaagggcggcgatatcgaagaaacagcacttaac
actaacctagaagcagccgatgaaattgcacgtcaattacgtctacgtgacctaggtggt
cttgttgttatcgactttatcgatatgactccggttcgccaccaacgcgaagtagaaagc
cgtctacgtgatgccgttcgtttagatcgcgcacgtgttcagattggtcgtatttctcgc
tttggtcttctagagatgtctcgtcaacgtttgagtccatcactagcagaagcaagccac
cacatttgtcctcgttgtacaggtactggtgttgttcgtgataacgaatctctagcacta
tctgttctacgtctgatcgaagaagaagctctaaaagacaacactgcgcaagttcttgct
gtagtccctgttcctatcgcttcttacctattgaacgaaaaacgtcgctcagtaaaccac
atcgagaagaaccaagaagttaagatcactgtagttcctaactctgacatggaaacaccg
cactttgaggttatccgtgttcgtgaaggtgaagagttcgacctactgtcttacttgctg
cctaccaagctagaagctctaaaagaagcagaaagcaaagagcctgcagaacagactatt
cgtcctaagaagatcgaagagccagctcttaaaggcttcgcagctcctgctcaatcagca
ccgactccagctccagtacctaaagctgtagaagagaaaaaagctgaatcagcagcgact
caagaaccaggtttagttggtcgtttcttcaaagctatcggtagcttcttatttggctct
tcaactcaagaagagaaaaaagaagaagagaagcaagaagagaaacctaagaacaatcgc
aacaacggcaaccgtcaacgccgtgatcgtaacgataaccgtcgtcgtaaccaacgtggt
gaccgtggtgaacaacgtggtgagcgtggtgacaatcgtaacgaaaaccgtgacaacaaa
cgccgtcgtaaaccagttcgtgatgagaaacctgaagagcagaaagaaactgctcctcag
caaaatcgccagcctcgtaagcctaagcaagaccgtcgcaataagccacgtgatgagcag
aagcaacgcgaagagctagcaccatctaaattagcagaagaaggtctacagctagcggca
gaagctcaagctgataaactagaagcgcctaaggctaagccagaagcgaaagcagctaag
attaaagagcgtcgtcagcgtcgtaaactgaacaaacaagttcgtattaaagaccaacaa
gctgaagctgcagaaaactcgtcaaatgagtctgctgttgctaaagaacagtctattgcg
aaagaacaatcagtagctcaagagcaaaaagttgcggaacaagtagaagcaactcaagca
aacgctgatgaacaaacagaacaggaagagccgaagcaacgtcgcaaccgtcgttctcca
cgccacctacgtgcaagtggtcaacgtcgtcgtcgcggtcgtgatcgtcgtcctaaccca
ttccgcctacgtaaaggtggtgtagcttctccagagatggctatgggtaaagtgatgcct
cgcttcattccaaaacctcaccataatcaggcaaaacctgaagtggctgaagttcaagta
gcagttgaaactcaagttgctgtacaagagcaaaacgtagctcaagagacggcaccacaa
agtaacagtgctatggctggcggctttgcatgtcctgaacttgcgatgggtaaagtcatt
atccgccgtgaagaagctgaaactgtcgttgaaactcaggtaactgaagctcctgcggta
gttgaaactgagaaagttgaaactccagtgattgctgaaactgcgaaagttgaatcgcct
gttgtagcagaagctgtgcaagtagaagcaacaccagttgttgaagctgaagcacctaaa
gctgaaagtgtaaaagtagaagaagctcctgtggtaaatgcagaagctcctaaagcggca
ccaaaggccgctgttgctaaaaaacaagcaggttcaccaatgactaaagctcctggtcct
caagagatcaaagagattcaagttgttgcggctccattccgtactgagcgttttgtatcg
aaaggtgcaggtagccaagcagcgtcaaataaagccggcgcaggcatgactaaacctcaa
tactaa
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