Vibrio atlanticus: VS_1081
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Entry
VS_1081 CDS
T00812
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vsp
Vibrio atlanticus
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsp03032
]
VS_1081
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_1081
Enzymes [BR:
vsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VS_1081
DNA replication proteins [BR:
vsp03032
]
Prokaryotic type
DNA Topoisomerases
VS_1081
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VS_1081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CAV18188
UniProt:
B7VM40
LinkDB
All DBs
Position
1:1137164..1139794
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AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTAGQSTGQKAAAVSTKGMSPED
KARIKKEKDRKALIKKMGINPYQEWEANYQILPGKEKVVAELQKLAENADHVYLATDLDR
EGEAIAWHLREIIGGDETRYKRVVFNEITKNAIQQAFETPGELNIDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFIPEEFWDVHADTKTAEKTDF
RLQVAQKDGVAFKPDNEAQTQAAVSVLEKAQYEVCKREDRPTKSKPSAPYITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSSEAVEAAREYIGSEFGAQYLPPKALV
YGSKEGAQEAHEAIRPSSVDVKSEDLNGVDADAHKLYSLIWNQFVACQMTPAQYDSTTVS
VKADEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQVGEKLDLIALDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVTDRLDGSFN
DLMNYDFTARMEQKLDQIAEGEASWKGVLDNFFEDFTGDLEKADLDEDAGGMKPNHIVET
DIECPTCSRKMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEDGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYVVEHGEFKVKGYDGPLVECDKCSS
DMVLKNGRFGKYMDCTSEDCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVEELVRFKDRISPKFQYLASAPVADPDGKPTVVRFSRKTK
ENYVRTEVDGKPSGWTALYIDGKWEVTDKRKKPKEK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctcgttatagtggagtcgccagccaaggctaaaactatcaataaatat
cttggcaaagactttgtcgttaagtcgagtgtaggtcacgttcgtgatttaccaacggcg
ggtcaaagtacaggtcaaaaggctgctgcagtttcaaccaagggtatgagcccagaagat
aaagctcgtatcaagaaagaaaaagatcgcaaagcgcttattaaaaagatgggtatcaac
ccttatcaagagtgggaagcgaattaccaaatcttaccgggcaaagaaaaagtcgttgct
gaattgcaaaaactggctgagaacgcagaccatgtttatctcgcaaccgatttggaccgc
gaaggagaagctatcgcatggcaccttcgtgagatcatcggtggtgatgaaacgcgatac
aaacgagtggtttttaacgaaatcactaaaaatgctattcagcaagctttcgaaactcca
ggcgagctaaatatcgacggcgtaaacgcacaacaagcacgacgttttatggaccgtgtt
gttggctttatggtgtcaccactgctttggaaaaaagtagcacgaggcctatccgctggc
cgtgttcaatctgtagctgtaaaactactggttgaacgtgagcgcgagatcaacgctttt
atccctgaagagttctgggatgtgcatgctgataccaaaacggcagagaaaacagatttc
agactgcaagtcgctcaaaaagacggtgttgcgtttaaacctgataatgaagcgcaaaca
caagctgcagtaagcgttttagaaaaagcgcaatacgaagtatgtaaacgtgaagaccgc
ccaactaagagtaagccgtctgcaccttacatcacgtcgactctgcaacaagcggcgagc
acacgtcttggttacggcgtaaagaaaaccatgatgttggctcaacgtttgtatgaagcg
ggttacatcacttatatgcgtactgactcgaccaacttgagttcagaagctgtagaagcc
gcacgtgaatacattggttctgagtttggtgcacaatatctcccaccgaaagcgcttgta
tacggcagcaaagagggcgcacaagaggctcacgaagcgattcgtccttcgagtgtcgat
gttaagtctgaagacctaaacggcgtagacgcagacgcacacaagctttactcgctgatt
tggaatcaatttgttgcatgtcaaatgacacctgcgcaatacgattcaacgacggtaagc
gttaaagctgatgagtacacgttaaaagcgaaaggccgtattcttaagtttgatggttgg
actcgcgttcaacgtccaatgggtaaaaatgaagatacgattcttcctgctgtacaggtt
ggtgaaaagctagacctaatcgcattagaccctaaacagcatttcactaagccgccagcc
cgttttactgaagcggcgctagttaaagagcttgagaagcgtggtattggtcgtccttca
acgtacgcatcaatcatctctacgattcaagaccgtggttatgtaaaagttgaacagcgt
cgtttctatgctgagaagatgggtgaaattgttactgaccgtctagatggcagtttcaat
gacctaatgaactatgactttacggctcgtatggagcagaagttagaccaaattgcagaa
ggcgaagcaagctggaaaggcgtgctagataacttcttcgaagactttacaggcgatttg
gaaaaagccgatttagatgaagacgctggtggcatgaagccaaatcatatcgttgaaacc
gatattgagtgtccaacttgtagccgtaaaatgggtattcgtacagcttcgactggcgta
ttcctaggttgttctggttatgcacttccaccaaaagagcgctgtaagacaaccattaac
cttggtgatgaagacggtattatcaacgttcttgaagaagacgttgaaaccgcagcactt
cgagcgaaaaagcgttgtccgatttgtgaaacggcaatggatgcttatctgatcgatgat
aagcgtaagatgcatgtgtgtggtaacaaccctaactgtgaaggttatgtggttgaacac
ggcgaattcaaagtgaaaggctatgatggtccgcttgttgagtgtgacaaatgtagttct
gacatggttttgaagaatggtcgtttcggtaaatacatggactgtacgagtgaagattgt
aagaacactcgtaagattctgaagaatggcgaagtagcgccacctaaagaagacccagtg
catttccctgaactcccatgtgaaaattcagatgcatacttcgtacttcgtgatggggct
tctggtttgtttatggccgcgagtaatttccctaaatcacgtgaaacacgtgcaccatta
gtggaagagctggttcgttttaaagaccgtatttcacctaaattccagtatctggcatca
gcaccggttgctgatcctgatggcaagccgacagtagttcgttttagtcgtaagacaaaa
gaaaactacgttcgtaccgaagtggacggtaaaccttcaggttggaccgctttgtacatc
gacggtaagtgggaagttacggataaacgtaaaaagcctaaagagaagtaa
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