Vibrio atlanticus: VS_1625
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Entry
VS_1625 CDS
T00812
Name
(GenBank) Nuclease sbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vsp
Vibrio atlanticus
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_1625
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VS_1625
Archaeal homologous recombinant proteins
VS_1625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
ABC_tran
SMC_N
cobW
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAV18804
UniProt:
B7VP61
LinkDB
All DBs
Position
1:complement(1740232..1743954)
Genome browser
AA seq
1240 aa
AA seq
DB search
MKILSLEFENLNSLKGRWKLDFTQSPFAENGLFAITGPTGAGKTTILDAICLALFHRTPR
LKSIAKGNNELMTRGTGECFAELEFEVQGKTYRSNFHQKRARGKHDGALQTPTCEFADAD
TDKVLETMLTKKTKLVEQVTGLDFSRFTKSIMLSQGEFAAFLNANANDRAELLEELTGTE
VYSLISERIYDHFKSSEESLNHLKAKAEGVSLLSEEQIQELTAERETLEAEQKRLAEQLK
EWQAHLSWWKDVTKAEQTIATSEHDLKTAQDELDRNQPSLERLANSEPAEKLRPMHKGLK
RCEQEVNTTQAHLDNSSKLLAVRDAEKQDAQTKLTQSSAIVEQVKTEQQDQEKIIDLVRP
LDNQIAVLKDKQTAAVNAANTLNEQHTQQRNQQIVLVQKIDALKQQDQLSTEYLNTHQTD
QHLEKYLGQWQAKVEQVRTLERQHAEQLNSAKQTLSAVDAQQTIIKSAQEAKATQDKTLS
ELVVLESSAKQQWVALQGNISEQVLNAQKDLLEYWNRNTHSLLEINRGFLNAQQQLHAKT
QAHQTNTQLVDKLSKEREVLVERYKEKETSLERLTRLIDQEGELAKYRAALESGSECPLC
GSTDHSIEQSQDTANLVAQKETENLELTAIKKEGQEHRQQLDSLAPMIAALNDDIQRAQA
DIQQAQLNWQGVVGKLQHSLSDFVGTAPELALLTINDLGNEAIVATFAQQCEVQLSQFSQ
QLKALADAKAHYAEAEKQRLSASVMADKAQSNLELAEQRLADLNKQNHSTNEQVAQIAQT
KEQQWNALKESIVQTAIEAPELEHIDDWFTAKSQASSTWQQTKQQQADIEKQLITQNAEL
KTLDDKLSSVEKELATLTQQSESLVLELTRISAERTELFGDKDIQATSNAMKQKVTEAVN
AFDAAQLVLNRSELEHRTEQTKHISFSEELTSKQSSYTQASNAWLEALKTSPFEDEVNFE
AALLDEEVRTQLQSLKKSLDEAIVSAQARLNTAKATQVELQNHVNAKAWQEQEQDQQQVE
EATTECQNAQQSHATKIGAISANLETDSQNRSNQQDLFKQIDEQQVEFDDISRLNSLIGS
KNGDKFRKFAQGLTLENLVYLANKQLQRLHGRYELKRKADDGLELQVLDTWQGDVMRDTK
TLSGGESFLVSLALALALSDLVSYKTSIDSLFLDEGFGTLDSDTLDIALNALDNLNASGK
MIGVISHVEALKERVPVQLKVTKHSGLGVSEMEKQYKVVA
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgaagattttaagcctagaatttgaaaacctgaactctttgaaagggcgttggaagctc
gattttacccaatcaccgtttgcagaaaatggtctgttcgcgattactggcccaacaggg
gcaggtaaaaccaccattcttgatgcgatttgtttggcattgttccaccgcacaccgcgt
ttaaagagcatcgctaaaggcaacaacgaattaatgacgcgtggcacgggtgagtgtttc
gctgagcttgaatttgaagtgcagggcaaaacgtatcgctctaacttccaccaaaagcga
gctcgcggaaagcacgatggcgcattacaaacgccaacgtgtgaatttgcggatgcggac
accgataaagtcttagagactatgttgaccaagaagacaaagttggtggagcaggtaacg
ggtctcgatttctcacgcttcactaaatcgatcatgttgtctcaaggtgagtttgcggcg
ttcttaaatgctaatgctaacgaccgtgccgagctacttgaagagctgacgggcacagaa
gtctatagcctgatctctgagcgcatctacgatcatttcaagtcgagtgaagagtcgctt
aatcaccttaaagccaaagcagaaggtgtgagcttactgtctgaagagcaaatccaagag
ctaaccgcagaacgagaaacgttagaagcggaacagaagcgtttagcggagcaattaaaa
gagtggcaagcgcatctaagctggtggaaagacgtaactaaagctgagcaaactatcgcg
accagtgagcacgatcttaaaacagctcaagatgaactagaccgtaatcaaccttcatta
gagcgcttggcaaacagtgagccggctgaaaagctgcgcccaatgcacaaaggtttaaag
cgttgcgaacaagaggtgaacactactcaagctcacttagataacagctctaagttactg
gccgttcgtgatgcagaaaagcaagacgcgcaaactaaattgactcaaagcagtgcaatt
gtcgaacaagtaaaaaccgagcaacaagatcaagagaagatcatcgatcttgtccgtccg
ctagataaccaaattgccgtactcaaagataagcaaactgcggccgttaatgcagcaaat
acgctaaacgagcaacacacgcaacagcgtaatcaacagattgttttagtccaaaaaatt
gatgcactgaagcaacaagatcaactcagcactgagtacttaaatacacatcaaactgac
caacatctggaaaaatacttaggtcagtggcaagcaaaggtagagcaagttcgtactcta
gagcgtcagcatgcagaacagttaaactcagcgaagcaaactttgtctgcggttgatgca
cagcaaacgatcatcaaatctgcgcaagaagctaaagcaacgcaagacaaaactttaagt
gaattggttgtgctagagagtagtgcaaagcaacagtgggtagcattgcaaggcaacatc
agcgaacaagtattgaatgcgcaaaaagatctgttggagtactggaatcgcaatacgcac
tcattacttgagatcaaccgtggtttcctaaatgcccagcaacagctgcacgcaaaaact
caggcacatcaaactaacactcagttggtcgataagctttcgaaagaacgtgaagtgttg
gtggagcgatataaagagaaagagacttcgcttgagcgattaacgcgtttgattgatcaa
gaaggcgagttggcgaaataccgtgcagctctagaatcaggctctgagtgcccgctatgt
ggttcaacagaccattcgattgaacagtcacaagacactgcaaatttggttgctcaaaaa
gaaacggaaaacctagagttaacggccatcaaaaaagaaggccaagagcatcgtcagcag
ttagattctctggcccctatgattgcggcgcttaacgatgacattcagcgagcgcaagcg
gatattcaacaagctcaactgaattggcaaggcgttgtcggcaagcttcaacatagctta
tctgatttcgttggcactgctcctgaactggcgttgctaacgattaacgatttaggcaat
gaagctatagtcgcgacctttgctcagcagtgtgaagttcaactaagtcagttctcgcag
caactcaaagcgttggctgatgcgaaagcacactatgccgaagctgagaaacaacgcttg
tctgcaagtgttatggctgacaaggcgcagtctaatctcgagttggccgagcaacgctta
gcggatctgaataagcaaaatcacagcacgaacgaacaagtggctcagatagctcaaaca
aaagaacagcaatggaacgctctgaaagagagcattgttcaaacggctatcgaagcgcct
gaacttgaacatattgatgattggtttactgcgaaatcgcaggcatcaagcacatggcag
caaaccaaacagcaacaggccgatattgagaagcaactgatcactcaaaatgccgaattg
aaaaccttagatgacaagctaagcagtgttgagaaagagctcgcgacactcacgcaacag
agtgagtctctagtgttagagttgactcgtattagtgctgaaagaacagagttgtttggt
gacaaagacattcaagccaccagcaatgcgatgaagcaaaaagtcaccgaagcggtaaat
gcatttgatgccgcgcagttggtgcttaaccgctccgagctggaacatcgaactgagcaa
accaaacacattagcttctctgaagagttgactagcaagcagtcaagttacacacaagcg
tcgaatgcttggttagaagcactgaaaacgagcccattcgaagatgaggtaaattttgaa
gcggcgttgttggatgaggaggttagaactcaacttcaaagcctgaagaagtctttagat
gaagcgattgtcagtgcacaagcaaggttgaataccgccaaagcgacgcaagtggagcta
caaaaccacgtaaatgcgaaagcatggcaagagcaagagcaagaccaacagcaagttgaa
gaagcaactactgaatgccaaaacgcacaacaaagccatgcgacaaagatcggcgcgatt
tcggccaatcttgaaacggatagccagaaccgcagtaatcagcaagatctgttcaagcag
atcgacgaacagcaggtcgagtttgatgatatctcacgtctgaactcacttatcggttct
aagaacggcgataaatttcgtaagtttgcccaaggtttaactctggaaaacttggtgtat
ttggcgaacaagcagctacagcgtttacatggtcgttatgagctaaaacgtaaagccgat
gatggcttagaacttcaagtgctcgacacatggcagggcgatgtgatgcgtgataccaag
acgttatccggtggcgaaagcttcttggtgagcttggcgttggcattagcgctttctgat
cttgtgagctacaaaaccagtattgattctctgttcttggatgaaggtttcggcacgctg
gatagcgacacattggacattgccctaaacgcgctcgataacctaaatgcgtcaggcaag
atgattggcgtcatcagtcacgttgaagcattgaaagagcgagtgcctgttcagcttaaa
gtaacaaaacactctggcttaggtgtcagtgagatggagaagcagtataaggttgttgct
tag
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integrated database retrieval system
