Vibrio atlanticus: VS_2215
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Entry
VS_2215 CDS
T00812
Name
(GenBank) PfaA, omega-3 polyunsaturated fatty acid synthase
Organism
vsp
Vibrio atlanticus
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PP-binding
ketoacyl-synt
Ketoacyl-synt_C
Acyl_transf_1
KR
KAsynt_C_assoc
PKS_DH_N
adh_short
ApeI-like
Motif
Other DBs
NCBI-ProteinID:
CAV19379
UniProt:
B7VI09
LinkDB
All DBs
Position
1:2366543..2374357
Genome browser
AA seq
2604 aa
AA seq
DB search
MSQPETNTPESVDDTRLNKRLKDMPVAIVGMASMFANSRYLNKFWDLISEKIDAITEVPD
THWRPEDYYDSDRTTPDKSYCKRGGFIPEVDFNPMEFGLPPNILELTDTSQLLSLIVAKE
VLEDAKLPEGYDRDKIGITLGVGGGQKIAQSLNARLQYPVLKKVFKSSGINDEDSEMLIK
KFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGINCVVDAACAGSLAAMRMALSELVEG
RSEMMITGGVCTDNSPTMYMSFSKTPAFTTNETIQPFDIDSKGMMIGEGIGMVALKRLED
AERDGDRIYSVIKGVGSSSDGKFKSIYAPRPEGQAKALKRAYDDAGFAPHTLGLLEAHGT
GTAAGDVAEFGGLNSVFSENNEEKQHIALGSVKSQIGHTKSTAGTAGLIKAALALHHKVL
PPTINVSAPNPKLDIENSPFYLNTQTRPWMKRVDGTPRRAGISSFGFGGTNFHVVLEEYT
PEHARGDKYRQRQVPQTLLFSAESRQALINELKQVSTQAADAAFKLEALAEQHALREVNA
KYARIGLVVTDQADLQAQLTQAISMLESQTKTHWQMPNGTSYRESALIAENGAGKVAALF
AGQGSQYLNMGRELACHYPEMRQQLAQADQVFGQHKKTALSQILFPIPTFTPEATKAQEA
VLTNTANAQSAIGTVSMGQFDIMTQAGFKADMVAGHSFGELSALCASGVISQDDYYQLAF
ARGDAMAATPEQGDSGTMFAVILDADKLPAVENCISQFEGVSIANYNAPTQLVIAGPTAT
VQQAAQALTEQGFKAIALPVSGAFHTPLVAHAQKPFASAIDKASFSAPTLPLYSNATGKL
HSKDAKAIKKAFKQHMLQSVRFSEQIEAMYEAGARVFVEFGPKNILQKLVEKTLADKNEE
LYAISINPSPKGDSDQQLRLAAVQLCVAGVSLDNIDPYQADIAEPAKASPMNIKLNATNY
ISPATRKKMDQSLASGNITEKTEIVEVKVEVEKIVEKEVIKTEIVEVPVAAPQASNVQQS
AAPAPSAQVATAALQPQVTQTAPATIQPAAQVTVDESSLQSFFNAQQQAAEVHQQFLAIP
QQYGDTFNTLMSEQAKMATAGVAIPENLQRSMEMFHQHQAETLKAHAHYLEMQAHSNSSA
LNMLTQGSVQTAQPTFVAPVNAQPAIQSPATPAAIVQQPVAQVQATAVQAAPVQAQSVQV
TPLQKAAPAPQVAAQAAAPVAAQPVPVKAQPAPVAAPVAVQSADAEKVMLEVVAEKTGYP
TEMLDLEMDMEADLGIDSIKRVEILGTVQDEMPNLPELNPEDLAEFRTLGEIVTYMNSKM
PSGVSNNEAAPVQAAAVANGLDAKVVQQTMLEVVAEKTGYPTEMLDLEMDMEADLGIDSI
KRVEILGTVQDELPTLPELNPEDLAECRTLGEIVDYMNSKLPASAPVSSLAPATSNNGLD
AAVVQNTMLEVVAEKTGYPTEMLDLAMDMEADLGIDSIKRVEILGTVQDELPTLPELNPE
DLAECRTLGEIVDYMNSKLPVSAQVAAQVSAPAQAVSNGLNAEQVQSTMLSVVADKTGYP
TEMLDLAMDMEADLGIDSIKRVEILGTVQDQLPTLPELNPEDLAECRTLGEIVAYMNSKL
GANEAPNAAPVSDSVLESASNDLNPAHVQSTMMEVVADKTGYPAEMLDLAMDMEADLGID
SIKRVEILGTVQDQLPTLPELNPEDLAECRTLGEIVTYMQSKLSAAAPVATPKAESVTPI
ADTATAELPPHNEVALKKLPAADKLVDCFSKDACVVITDDGHNAGVLAEKLTANGIQVAV
VRSALSAASPLNSEIASYTLNSVDDAGVTAVINDIEADLKTSNKVIAGFIHLQAIVDAKQ
SNEQAVNLNADSRASLTTAFLFAKHLNGQLNAVSGRSVFFTLSRIDGGFGYLDAKQLANA
ELNQAALSGLTKTLSHEWSSVFCRALDADASIDARHLAEAITGELFDIDTNTVEIGLSHA
ENGESGRATLIATTPGAAQTKNTGAQLTKNDKVLVTGGAKGVTFECALTLAKQCKSHFIL
AGRSKHITSAELPQWAQGKQEKELKPAAIAHLQATGDKPTPKKVDALLKPVLSSLEINAA
LAAFNEIGASAEYLSLDVSNHESVAKTLANFEGITGLIHGAGVLADKHIQDKTLDELNMV
YGTKVGGLEAVLGGLDSSKLKLIAMFSSAAGFYGNTGQSDYSMSNEILNKAALQLSARNP
QAKVMSFNWGPWDGGMVNAALKRMFTERGVYVIPLQAGAELFSSQLLNETGIQLLVGTSM
QGSDNKEAAVKKLNAESVHLAESPLNTSITVTRHLDPKALPFIQDHCIAGNPVLPTVCAI
QWMREVAEQLLGVNVSVHNYKLLKGVIFDTDEVQELTLVLSSDAKSKDQLKAVISCQGRP
QYQAQLQVASVQVSEDVQQASTKRFEANTSAPVTTAQALYSDGTLFHGPRLQGITSVERF
DDLGLLAQCQLPQIENSDCGSFIPKQGFGDSQPFAEDYLLQAMLVWARLKYGAASLPSAI
GEFVCYAPMHNGDQGWLELSVIKSTARSLQADISLYHQDGRLSAVMKGAKVTISKSLNDA
FLPKSSSAVSKKEATKNPEKEQLS
NT seq
7815 nt
NT seq
+upstream
nt +downstream
nt
atgagccaacccgagacaaatacaccggaatcagtcgacgatactcgactgaataaacgc
cttaaagatatgcctgtcgctatcgttggtatggcgagcatgtttgcaaactctcgctac
ctgaataaattttgggaccttatcagcgaaaagatcgatgcgattactgaagtaccagat
acgcactggcgtccagaagattactacgactcagatcgtactacgccagacaagtcttac
tgtaagcgcggtggtttcatccctgaagtggacttcaatcctatggagttcggccttcca
ccaaacatcctagaactgactgatacgtcgcagctgctttctctgatcgttgcaaaagaa
gtacttgaagatgccaagctgcctgaaggctacgatcgcgataagatcggtatcacgctc
ggtgttggtggtggtcagaagatcgctcaaagcctgaatgctcgtctgcaataccctgtt
ttgaaaaaagtcttcaagagcagtggcatcaacgacgaagacagcgaaatgctgatcaaa
aagttccaagaccaatacatccactgggaagagaactcattccctggttcattaggtaac
gtaatttcaggtcgtatcgctaaccgctttgaccttggtggcatcaactgtgtagtagat
gctgcgtgtgcaggttctctagccgctatgcgtatggctctaagtgagctggttgaaggc
cgcagtgaaatgatgatcacaggtggtgtgtgtactgataactcgccaaccatgtacatg
agcttctctaaaacacccgcatttaccaccaatgaaaccattcaacctttcgacatcgac
tcaaaagggatgatgattggtgaaggcatcggtatggttgctctgaagcgtcttgaagat
gcagagcgcgacggcgacagaatctactcagtgattaaaggtgtgggttcttcttcggat
ggtaagttcaagagtatttacgcacctcgccctgaaggacaagcaaaagcactaaaacgt
gcttacgatgatgctggtttcgcaccgcacacgcttggcctattagaagcgcacggtaca
ggtacagcagcaggcgatgtggctgaatttggtggcttaaactcggtattcagtgagaac
aatgaagagaagcaacacattgcattaggctctgtgaaatctcaaattggtcacactaaa
tcaactgcgggtactgcaggtttaatcaaagctgcattggcactgcaccacaaagtactg
ccgccaacgattaacgtatcggctccgaatcctaaactggatatcgaaaactcgccgttc
tacctaaacacacaaacgcgtccttggatgaaacgtgtcgacggcacaccacgccgtgca
ggtattagctcatttggttttggtggcactaacttccacgttgtattagaagagtacaca
ccagagcacgctcgcggtgacaaataccgtcagcgccaagtgccacaaacactgttattc
agcgcagaatctcgtcaagcactgatcaatgaactaaaacaggtttcaactcaagcggca
gatgctgcgttcaaactagaagcgcttgctgagcaacacgctctacgcgaagttaacgct
aagtacgctcgtattggtttagttgtcactgaccaagcagaccttcaagcgcaactgact
caagcgatttctatgcttgagagtcaaaccaaaacacattggcagatgccaaacggtact
agctaccgtgagtcagcactgattgctgaaaacggtgcgggtaaagtagcggcgctattt
gcaggtcaaggttcgcaatacctgaacatgggtcgcgagcttgcttgtcattaccctgaa
atgcgccaacagcttgctcaagcggatcaagtatttggtcagcacaagaaaacggctctg
tcacaaattctgttcccaattccaaccttcacaccagaagcaaccaaagctcaagaagcg
gtgttaaccaacacggccaatgcgcagagtgcgattggtactgtgtctatgggtcagttc
gacatcatgactcaagcaggcttcaaagcagacatggttgcaggccacagctttggtgag
ctaagtgcactatgtgcatcgggtgttatctcgcaagacgattactaccagctagctttc
gctcgtggcgatgcgatggctgcgacacctgaacaaggtgacagcggtactatgtttgcg
gtcatcctagacgcagacaaacttccagccgttgaaaactgtatcagccaattcgaaggc
gtgagtattgccaattacaacgctccgactcaactggttattgcaggtccaactgcgacg
gttcaacaagcagcacaagcgctaacagaacaaggcttcaaagcaattgctctgcctgtt
tctggcgcgttccacacgccgcttgttgcccacgctcaaaaaccatttgcttctgcaatt
gataaagcttcattcagcgctccaacgctgccgctttactcaaacgcaacaggcaaactt
cacagcaaagacgctaaagcgatcaagaaagcgttcaagcaacacatgctgcaatcggtt
cgtttcagcgagcaaattgaagcgatgtatgaagcaggcgcgcgtgtattcgttgagttc
ggtcctaagaacattcttcaaaagctggttgagaaaacattggctgataagaacgaagaa
ctttacgcaatcagcatcaacccaagccctaaaggcgacagtgaccaacaacttcgctta
gctgcggttcaactgtgtgtggctggtgtttcattagacaacattgacccttaccaagct
gacattgctgaacctgcaaaggcatcaccaatgaacatcaagctgaatgcaaccaactac
atcagccctgctactcgtaagaaaatggatcaatcattggcttcaggcaacatcaccgaa
aagactgagattgttgaagtgaaagttgaagtcgagaaaatcgtggaaaaagaagtgatt
aaaacagaaatcgttgaagtacctgtggctgctcctcaagcttcaaatgtacaacagtca
gctgctccagcaccaagtgcacaagtagcaacagcagcgctgcaacctcaagtgacacaa
actgcaccagcgactattcagccagcagctcaagtaacggttgatgaatcttcactgcaa
tcgttcttcaatgctcaacaacaagcagcagaagtacatcagcagttccttgcaattcct
cagcaatacggtgacacgttcaacaccctaatgtctgagcaagcgaaaatggcaacagca
ggcgtagcaattcctgagaacctacagcgttctatggagatgttccaccagcaccaagct
gaaacgctaaaagctcacgctcattacctagagatgcaagcgcacagcaacagctctgca
cttaatatgctgacgcaaggttccgtgcaaacggcacaaccaaccttcgttgcgccagtc
aatgctcagccagcgattcaatctccagctactccagcagctatcgttcaacagcctgtg
gctcaagtacaagcgactgctgtacaagccgcgccagttcaagctcagtctgttcaagtt
acgccattacagaaagcagctcctgcgccacaagtagcggctcaagcggcagcgcctgtt
gcagctcagcctgtgccagttaaagcacaaccagctcctgtagctgcaccagtagcagta
caatcagccgatgctgaaaaagtgatgctagaagtggtcgctgagaaaacgggttaccca
acggaaatgcttgatctagaaatggacatggaagcagaccttggtatcgactcaatcaaa
cgcgtagagattcttggtaccgttcaagacgaaatgccaaacctacctgagctgaaccct
gaagatttagctgagtttcgtactcttggcgaaattgttacttacatgaacagcaagatg
ccttctggagtttcaaataatgaagctgcaccagttcaagcagctgctgtagctaatggt
cttgatgcgaaagtcgttcaacaaaccatgctagaagtggttgctgagaagacaggttac
ccaacggaaatgcttgatctagaaatggatatggaagcagaccttggtatcgattcaatc
aaacgtgttgagatccttggtacggttcaagatgaactgcctactcttccagagctaaac
cctgaagatttagccgagtgtcgtactcttggcgaaatcgttgactacatgaacagcaag
cttccagcttctgctccagtgtcttcactagctccagcaacatctaacaatggtctggat
gctgctgtcgttcagaatacgatgctagaagtagtcgcagagaagacgggctatccgact
gaaatgctcgacctagcaatggacatggaagctgaccttggtatcgactcaatcaagcgt
gttgaaattctaggtacagttcaagacgagctaccgactcttccagaactgaaccctgaa
gatctcgctgagtgtcgtactcttggcgaaatcgtagactacatgaacagtaagcttccg
gtttctgctcaagtagccgctcaagtatctgcaccagcgcaagcagtatcaaacggttta
aacgcagagcaagttcaaagcacaatgctgagcgtagtggctgataaaacgggctaccca
acagaaatgctcgacctagcaatggacatggaagcagaccttggcatcgactcaatcaaa
cgtgttgagatccttggtacggttcaagaccagctaccaacactgccagagctgaaccct
gaagatctcgctgagtgtcgtactctgggtgaaatcgttgcttacatgaacagcaagcta
ggcgctaatgaagctcctaacgcagcacctgtttcagattcagttttagaaagcgcaagc
aacgacctaaaccctgctcatgttcaatcaactatgatggaagtggttgccgacaaaaca
ggttacccagcagaaatgctcgacctagcgatggacatggaagcagaccttggcatcgac
tctatcaaacgcgttgaaattctaggtacggttcaagaccaactaccaacgctgccagag
ttaaaccctgaagacttagctgagtgtcgtactcttggtgaaatcgttacctacatgcaa
agcaagctatccgcagcagcacccgtagcgactcctaaagctgaatcagtaacgcctatc
gcagacacagcgacagcggaacttcctccacacaatgaggtggcgctaaaaaagctacca
gcggcagataaactcgtcgattgtttctcaaaagacgcttgtgtcgtgatcacagatgat
ggtcacaacgccggtgttctagcagaaaagttgaccgctaacggcattcaagttgctgta
gtgcgtagtgctctttctgccgcgtcacctttaaacagtgaaatcgcaagctacacactc
aacagcgtcgatgatgctggtgtgactgcggttattaacgacatcgaagcagaccttaaa
acgtcgaacaaagtgattgctggcttcattcatttacaagctatcgttgatgcgaaacaa
agcaacgagcaagcggttaacttgaatgcagattcaagagcttcactcacgactgcgttc
ttattcgccaagcacctaaatggccaactgaatgcggtatctggtcgtagcgtgttcttc
acactaagccgtatcgatggtggctttggttacctagatgctaagcaattagcgaatgca
gaacttaaccaagcggcgctgtctggtctaactaagacactaagccatgaatggtcaagc
gtgttctgccgtgcattggatgctgacgcttctattgatgctcgtcacctagctgaagct
atcacaggcgaactgttcgatatcgataccaacacggttgaaatcggccttagccatgca
gaaaacggtgaatctggtcgcgcaacattgattgctacaacaccaggcgctgcacaaact
aaaaacacaggcgctcaactcaccaagaacgacaaagttttggtgacgggtggcgctaaa
ggcgtgacgtttgaatgtgcactgacgcttgctaagcaatgtaagtctcacttcattctt
gcaggtcgtagtaagcatattacttcagctgagctacctcagtgggcacaaggcaagcaa
gagaaagagctaaaaccagcggctatcgctcacctacaagcgacgggtgataagccaacg
ccgaaaaaagttgatgccttgctaaaaccggtattgagcagccttgaaatcaacgcagca
cttgccgctttcaacgagattggcgcgagtgctgaatacctaagcctagatgtatcgaac
catgagtcagtagcaaaaacgctggcgaatttcgaaggcatcacaggtcttatccacggt
gcaggcgtactggctgacaagcacattcaagataaaacacttgatgaactgaacatggtt
tacggcacgaaagtaggcggactagaagcggttcttggtggtcttgatagcagcaagcta
aaactgattgcgatgttctcttcggcggcgggtttctacggaaacacaggccaaagtgat
tactcgatgtctaacgaaatcctaaacaaagcggctctgcagctgtctgctcgtaaccct
caagcaaaagtgatgagcttcaactggggaccgtgggacggtggcatggtaaacgcagca
ctgaaacgtatgtttacagagcgcggtgtgtacgtaattcctcttcaggcgggtgcagag
ctatttagttctcaactactgaacgaaactggcattcaattgctggttggtacgagcatg
caaggttctgacaacaaggaagctgctgtaaaaaagcttaatgcggagtctgtgcatctt
gcagagagtccgctgaatacaagcattactgtgacacgtcatcttgatccaaaggcattg
cctttcattcaagatcactgcattgccggtaacccagtgttaccgacagtgtgtgccatc
caatggatgcgtgaagtggcagagcaactgttaggagtgaacgttagcgttcacaactac
aaactgctgaaaggtgtgatttttgatactgatgaagtgcaagagctaacgcttgtcttg
tcttcagacgctaaatcaaaagatcagctaaaagcagtgatcagttgccaagggcgacca
cagtatcaagctcagttgcaagttgcctctgtgcaagtgtctgaagatgttcaacaagcg
tcgacaaagcgctttgaagccaacacttcagcacctgtaacaacggcacaagctctatac
agtgacggcactctgtttcatggaccaagactgcaaggtattacctcagttgaacgcttt
gacgacttaggcttattggctcaatgccagttgcctcagattgaaaacagcgactgcgga
tcatttattcctaagcaaggctttggcgatagccaaccatttgctgaagattatctgtta
caagcaatgctggtatgggctcgattgaaatacggcgcggcaagcctaccgtctgcaatc
ggtgagtttgtttgttacgcaccgatgcacaatggtgaccaaggttggctagagctgagc
gtgataaaaagcacggctcgttcactgcaagctgatatctcgctttaccaccaagatggt
cgtttaagcgcagtaatgaaaggtgccaaagtcactatcagcaagagcttaaatgacgca
tttttaccgaaatctagctcagcagtgtcgaagaaagaggcgactaagaacccagaaaag
gagcaattgtcatag
DBGET
integrated database retrieval system
