Vibrio atlanticus: VS_2219
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Entry
VS_2219 CDS
T00812
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vsp
Vibrio atlanticus
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsp03016
]
VS_2219
Enzymes [BR:
vsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VS_2219
Transfer RNA biogenesis [BR:
vsp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VS_2219
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
CAV19383
UniProt:
B7VI13
LinkDB
All DBs
Position
1:complement(2384092..2385285)
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AA seq
397 aa
AA seq
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MVLECRQLMSAFLYPAIKVKSVRVFVDYQIITQVKDLERVCQQAREADVVMLDTEFVRTR
TYYPQLGLIQLFDGETLSLIDPIALDEMTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGC
TPTPMVDTQIMAAFLGHGLSTGFAALVSEFVGVDLDKSESRTDWLARPLSQKQLDYAAAD
VHYLMPMYNKLLEKVMEAGWWEAAQQESDLQVAKRIRKANPDNAYLDIKGAWQLKPQQLA
ILRPLATWRLKEAIKRDLALNFVFKEQDLWAVARFAMKDPKHMEQEGFDYRSVRRHGAKI
SSIVKLAEHTPEEEYPAPVERLMDYPGYKQLFKVLKDEVKTASQHSGLATEFLASKKQLN
QVLSWIWKHDRNPEKLPDVMQGWRLDVVGEKLNKAIK
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggtgttagaatgccgacagttaatgtcggcatttttgtatccggcgatcaaagtaaaa
tcagtgagagtttttgtggattatcaaatcattacccaagtgaaagaccttgagcgagtt
tgccaacaagcacgtgaagccgatgttgttatgcttgatacagagttcgttcgtacaaga
acctattaccctcaattaggcttaattcagttatttgatggtgaaacgctgtcactgatt
gatcctattgctcttgatgaaatgaccccgtttgttgggttattgaaagacacttcagta
ctgaaagttttgcacgcgtgtggcgaagatctagaagtgttccagaacgcatttggctgt
acgccaacgccaatggttgatacgcagatcatggcagccttcttaggtcatggtctttca
actggctttgcagctctcgtttcagagtttgtaggcgttgacctagataagagtgaatct
cgcaccgactggctagcgcgtccgctttctcaaaagcaactcgactacgcagcagcagac
gttcactacttgatgccaatgtacaacaagcttctagaaaaagtgatggaagcgggctgg
tgggaagcggcgcagcaagagtctgatttacaagtggctaagcgcatccgtaaagcaaac
ccagataacgcttaccttgatattaaaggcgcgtggcagctaaagcctcaacagttagcg
atcttacgacctttagcaacttggcgtctaaaagaagcaatcaagcgcgatttagcgctg
aactttgtctttaaagagcaagacttatgggcagtagcgcgtttcgcgatgaaagatcct
aaacatatggagcaagaaggttttgattaccgctctgtacgtcgccatggcgctaaaatc
agttcaatcgttaagttagctgagcatacgccagaagaagaatacccagcgccagtagaa
cgtctaatggactacccaggttacaaacaactcttcaaagtgttgaaagatgaagtgaaa
acagcttcgcaacacagtggtttagcgactgaatttttggcgtcgaagaagcaacttaac
caagtgttaagctggatatggaagcacgatcgtaatcctgaaaagctgccagatgttatg
caaggttggcgtttagatgtggttggcgagaagctaaataaagcgatcaaataa
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