Vibrio atlanticus: VS_2962
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Entry
VS_2962 CDS
T00812
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VS_2962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsp03021
]
VS_2962
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_2962
Enzymes [BR:
vsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VS_2962
Transcription machinery [BR:
vsp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VS_2962
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VS_2962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CAV20258
UniProt:
B7VM68
LinkDB
All DBs
Position
1:complement(3120682..3124917)
Genome browser
AA seq
1411 aa
AA seq
DB search
MSSFNSLQELNVKDLLNFLKAQHKTEEFDAIKIGLSSPDTIRSWSFGEVKKPETINYRTF
KPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELAS
PVAHIWFLKSLPSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRL
EEWGDEFTAKMGAEAIKDLLSTMDLHQEVEEMREELETTNSETKRKKVTKRLKLVEAFIS
SGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPD
IIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY
SGRSVITVGPYLRLHQCGLPKKMALELFKPFIYSKLETRGMATTIKAAKKMVEREEAIVW
DILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVH
VPLTLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLAG
PAEAEKAYRTKTAELHARVKVRITETVVDEDGNSTTNTGLVDTTVGRAMLWQIVPAGLPY
SIVNQKLGKKQISTLLNECYRKLGLKDTVVFADQIMYAGFAYAALSGVSVGINDMVVPQA
KYDEIESAEEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMDNLSSETVINR
DGEEEQQESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNV
LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGIDMMPHIEGG
DVKVALSELALGRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEDNSVDSMKVRSVVTCD
ADFGCCAQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENS
IQAKTTGTVKLHNAKFVVNKDKKLVITSRASEMTIIDEFGRTKEKHKLPYGSMLTKGDNA
AVTAGEVVANWEAHTMPIITEVAGRIQFVDMIDGITVSRQTDDLTGLSSSEVTDAAARPA
AGKDMRPAIKLVDEQGNDVMIPGTDMPAHYFLPGKAIVNIEDGAEVGIGDTLSRIPQKSS
GNKDITGGLPRVADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITREGGDAYEEMI
PKHRQLNVFEGEKIERGDVIADGPETPHDILRLRGIHAVTQYIANEVQEVYRLQGVKIND
KHIETIVRQMLRKCTITHSGDSPFLPGEQVEYHNVKIANRKLEAEGKELVRFERDLLGIT
KASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQ
KQREEEQEGPSAEQATDNLAALLNAGFSSEE
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcctttaactccttacaggagctgaacgtgaaagacttattaaactttctaaaa
gcacagcataagaccgaagaatttgatgcaatcaaaatcggtctatcttcaccagacacg
atccgttcgtggtcttttggtgaagttaaaaagccagaaacaattaactatcgtacgttc
aaacctgaacgtgatggtctgttctgtgcacgtatttttggtccagttaaagactacgaa
tgtctttgtggcaaatacaagcgcctgaagcaccgtggtgttatctgtgagaagtgtggc
gttgaagttacacaaactaaagttcgtcgtgaccgtatgggccacatcgagcttgcttca
ccagttgctcacatctggttcctaaaatcactaccgtctcgtatcggtctactaatggat
atccctctgcgtgatatcgaacgtgttctttacttcgaaatgtacgtagtaactgaaccg
ggtatgactgatctagaaaaatctcagatgcttactgaagaagagtatctggatcgtcta
gaagagtggggtgacgaattcactgctaagatgggtgctgaagcgatcaaagatctgctt
tcaacaatggaccttcatcaagaagtggaagaaatgcgcgaagagttggaaacaactaac
tctgaaactaagcgtaagaaagttactaagcgtttgaagctagttgaagcgttcatttcg
tcaggcaacaagcctgagtggatgatcctaactgtacttccagtgctaccgccagatcta
cgtcctctagtaccactagatggcggtcgttttgcgacatctgatctgaacgacctttac
cgtcgtgtgatcaaccgtaacaaccgtttgaagcgtcttctagagctagcggctccagac
atcatcgtacgtaacgaaaagcgtatgctgcaagagtctgttgatgcccttctagataac
ggtcgtcgcggtcgtgcgatcacgggttctaacaagcgtcctctgaaatctcttgctgat
atgatcaagggtaaacaaggtcgtttccgtcagaaccttctaggtaaacgtgtagactac
tctggccgttctgtaatcacagttggtccataccttcgtctacatcagtgtggtcttcct
aagaagatggcacttgagctatttaagccgttcatctacagcaagctagaaactcgtggc
atggctacgacaatcaaagctgctaagaaaatggtagagcgcgaagaagcgatcgtttgg
gatatcctagacgaagttatccgtgaacacccagtactgcttaaccgtgcacctacactt
caccgtctaggtatccaagcgtttgaaccagtactaatcgaaggtaaagcgattcagctt
cacccactagtgtgtgcggcatacaacgccgacttcgatggtgaccaaatggctgtacac
gtgcctctaactctagaagcacagcttgaagctcgtaccctaatgatgtcgacgaataac
attctgtcgccagcatcaggtgatccaatcatcgtaccttctcaggacgttgtattgggt
ctttactacatgacacgtgacaagatcaacgtgaaaggtgaaggtatgtaccttgctggc
cctgctgaggctgaaaaggcataccgtactaagactgctgagctacacgctcgcgttaaa
gtacgtatcactgaaactgtagtagatgaagacggcaatagcacaacgaatactggtcta
gttgatacgactgtaggtcgtgcaatgctatggcagatcgttcctgctggcctaccgtac
agcatcgttaaccaaaagttaggtaagaagcagatctctactcttcttaacgagtgttac
cgtaagcttggtctaaaagatacagtagtatttgctgaccaaatcatgtacgcaggtttc
gcatacgcggcactttctggtgtttctgtaggtatcaacgatatggttgttcctcaagcg
aaatacgatgaaattgaatctgctgaagaagaagttcgtgaaatccaagagcaattccaa
tcaggtcttgttactgcgggtgagcgttacaacaaagttatcgatatctgggcatctacg
aatgaccgcgttgcgaaagcaatgatggataacctatcttctgaaacagttatcaaccgt
gacggcgaagaagaacagcaagaatcgttcaacagcatctacatgatggccgactcgggc
gcacgtggttctgcagctcagattcgtcagctagcaggtatgcgtggtctgatggcgcgt
ccagatggttcaatcatcgaaacgccgatcacagcgaactttaaagaaggtctaaacgtc
cttcagtactttatctcaacgcacggtgctcgtaagggtcttgcggatacagcactgaaa
acagcaaactcgggttacctaactcgtcgtctagtagacgttgctcaagacgttgtagta
cacgaacatgactgtggcacgcatgaaggtatcgacatgatgcctcacatcgaaggtggt
gacgttaaagttgcactttctgagcttgctctaggtcgtgtagtagctgaagacgttctt
aagcctggtactgaagatgtactgattccacgtaatactctgattgatgagaagtggtgt
caaatcatggaagacaactcagtagatagcatgaaagtgcgctctgttgttacctgtgat
gcagacttcggttgttgtgcacagtgttacggtcgtgacctagcacgtggtcacctagtg
aatcaaggtgaagcagttggtgttatcgctgcacaatctatcggtgaaccgggtacacag
ctaacgatgcgtacgttccacatcggtggtgcggcatctactgcagcagcagagaacagc
atccaagctaagacaactggtactgtgaaacttcacaatgctaagttcgtagttaacaaa
gataagaaactggttatcacttctcgtgcatctgagatgacgattattgatgaattcggc
cgcactaaagagaagcacaaacttccttacggttcgatgctaaccaaaggcgacaacgca
gcagttactgctggtgaagttgtagctaactgggaagcgcataccatgccaatcatcact
gaagtggcaggtcgtatccaattcgtagatatgatcgatggtattacagtttctcgtcaa
actgacgatctaacgggtctttcttcaagtgaagtaacagacgcagcagctcgcccagca
gcaggtaaagatatgcgtccagctatcaaacttgttgatgagcaaggtaacgacgtaatg
atccctggtactgatatgccagctcactacttcctacctggcaaagcgattgtaaacatc
gaagatggcgctgaagttggcattggtgacacactatctcgtatccctcaaaaatcgagc
ggaaacaaagatatcaccggtggtctaccacgcgtagctgacctattcgaagctcgtaag
cctaaagagcctgcgatccttgctgagcacacaggtactgtgtctttcggtaaagaaacg
aaaggtaagcgtcgtctagtaatcactcgtgaaggcggtgacgcttacgaagagatgatt
cctaagcatcgtcaattgaacgtgttcgaaggtgagaagattgaacgtggtgatgtaatc
gccgacggtcctgaaactccacacgatatcctgcgtctacgtggtatccacgcagtaact
cagtacatcgcgaacgaagttcaagaagtttaccgcttacaaggcgtaaagattaacgat
aagcacatcgagactatcgttcgtcaaatgctacgtaagtgtacaatcactcattctggt
gactctccgttcctacctggcgaacaagttgagtaccacaatgttaagattgctaaccgt
aagctagaagctgaaggtaaagaactagtacgtttcgaacgtgacctactaggtattact
aaagcatctcttgcaactgagtcattcatctcagctgcatcgttccaagaaacgactcgc
gtactaacagaagctgcggtttctggtaagcgtgatgaccttcgcggcctgaaagagaac
gtaattgttggtcgtctgatcccagctggtactggtttcgcataccaccaagagcgtcaa
aagcaacgtgaagaagagcaagaaggtccttcagctgaacaagctactgacaatctagca
gcacttctaaacgctggtttctcttcagaagagtaa
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integrated database retrieval system
