Vibrio atlanticus: VS_2963
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Entry
VS_2963 CDS
T00812
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VS_2963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsp03021
]
VS_2963
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_2963
Enzymes [BR:
vsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VS_2963
Transcription machinery [BR:
vsp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VS_2963
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VS_2963
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
DUF7073
Motif
Other DBs
NCBI-ProteinID:
CAV20259
UniProt:
B7VM69
LinkDB
All DBs
Position
1:complement(3124975..3129099)
Genome browser
AA seq
1374 aa
AA seq
DB search
MIVHYSKQLFVTAPSEECFGWFGSLISELRNPMVYSYTEKKRIRKDFGTRPQVLDIPYLL
SIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQYVSYRLGEPVFDVKECQIR
GVTYSKPLRVKLRLVIFDRDAPAGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQ
LHRSPGVFFDSDKGKTHSSGKVLYNARVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASI
ILRALGKSTEEILDLFFDKVNFEVKDQTLLMELVPDRLRGETASFDIEANGKTYVETGRR
VTARHIRQLEKDGVEHIEVPVEYIVEKIAAKDYINEATGEIIVGANQEISLEALANLSQA
GHKTLEVLFTNDLDHGPFMSDTLRADSTVDRISALVEIYRMMRPGEPPTKEAAESLFESL
FFSEDRYDLSTVGRMKFNSSIEREEEEERGTLDESDIIEVMKKLIGIRNGIGEVDDIDHL
GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGS
SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPN
IGLINSLSAFARCNDYGFLETPYRRVVDGVVTEEVDYLSAIQEGQFVIAQANTILTEEGT
FADELITARQKGESGLHPRDHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQ
AVPTLRADKPLVGTGIERNIAVDSGVTAVAKRGGQVQSVDASRIVVKVNEDELVPGEAGI
DIYNLTKYTRSNQNTCINQRPTVLPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWN
GYNFEDSILVSERVVQEDRFTTIHIQELSCVARDTKLGSEEITADIPNVGESALSKLDES
GIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTI
IDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLNRVKAVLLSGGYSEAK
LDTIGRKQWLEQVLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLK
IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMN
IGQILEVHLGLAAKGIGDKINQMVKEQQELHKFREFLQKVYDLGDTRQKVDIAELSDDQV
RTLIKNLRGGLPIATPVFDGASESLIKELLKLGDLPESGQLKLFDGRTGDSFERPVTVGY
MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE
MLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgattgttcactacagtaaacagctgtttgtcaccgccccctctgaagagtgttttggg
tggtttgggtcacttatcagcgagctgaggaaccccatggtttactcttataccgagaaa
aagcgcatccgtaaggattttggtactcgtccacaagttttggacattccatacctgtta
tcgatccagcttgattctttcgacaaattcatcgaacaggatcctgaaggtcaatacggt
cttgaagctgctttccgttctgtatttccaattcagagctacaacggcaattctgagctg
caatacgttagctaccgtcttggtgagccagtttttgacgttaaagaatgtcaaatccgc
ggtgttacttactcaaagccactacgcgtaaaactacgtctagttatctttgatcgagat
gcaccagcaggtactgtaaaagacattaaagaacaagaagtctacatgggcgaaattccg
cttatgacagacaatggtactttcgtaattaatggtaccgagagggttatcgtatcccag
ctgcaccgaagcccaggcgtgttcttcgacagtgataagggtaagacccactcatcaggt
aaagttctttataacgcacgtgtaattccttaccgtggctcatggttagactttgagttc
gatcctaaggataacttattcgtacgtatcgaccgtcgtcgtaagctaccagcatcgatt
atccttcgtgcacttggtaaatcgactgaagagatcctagatctgttcttcgacaaagtg
aacttcgaagtgaaagaccaaactctacttatggagttggttcctgatcgtctacgtggt
gaaactgcgtcattcgacatcgaagcaaacggcaaaacttacgttgagactggtcgtcgt
gtaactgctcgccatatccgtcaacttgaaaaagatggcgttgagcacatcgaagtacca
gtagagtacatcgttgaaaagattgctgcgaaagattacatcaacgaagcaactggcgag
atcatcgttggcgcaaaccaagagattagcctagaagcacttgctaacctgtctcaagca
ggtcacaagactctagaagtgctgttcacgaatgacctagaccatggtccattcatgtca
gacactctacgtgcggatagcacagtagatcgcatctctgcattggtagaaatctaccgc
atgatgcgtcctggcgagccaccaacgaaagaagctgcagaatcattgttcgaaagccta
ttcttctctgaagatcgttacgacctatcaactgtaggccgtatgaaattcaacagctct
atcgagcgtgaagaagaagaagagcgcggtactctggatgaatcagacatcatcgaagtg
atgaagaaactgattggtatccgtaacggcattggtgaagtggacgatatcgaccacctt
ggcaaccgtcgtatccgttctgtaggtgaaatggcagaaaaccaattccgtgttggtcta
gttcgtgtagaacgtgccgttaaagaacgtctaagccttggtgaccttgatgcaatcatg
cctcaagaccttatcaacgctaagcctatctctgctgcagttaaagaattctttggctct
tcacagctttcacagtttatggaccaaaacaacccattgtcagaagttacgcacaagcgt
cgtatctctgctttaggtcctggtggtcttactcgtgagcgcgcaggcttcgaagtacgt
gacgttcacgtaactcactacggtcgtctatgtccgatcgaaacgcctgaaggtccaaac
atcggtctaattaactcgctatctgcatttgcacgttgtaacgattacggtttcctagaa
actccgtaccgtcgtgtagtagatggtgtagtaacagaagaagttgattacctgtctgca
atccaggaaggtcaattcgtaatcgcgcaagcaaataccattcttactgaagaaggtact
tttgcagatgagctaatcacagctcgtcaaaaaggtgaatctggtcttcacccacgcgat
cacgttgactacatggacgttgcgacaaaccaagtagtatctatcgctgcttcgcttatc
ccgttcctagaacacgatgatgcgaaccgtgcattgatgggtgccaacatgcaacgtcaa
gctgtaccaacacttagagctgataagcctctagtaggtacgggtatcgaacgtaacatc
gcagttgactctggtgttacagcggttgctaaacgtggtggtcaagttcagtctgttgac
gcttctcgtatcgtagttaaggttaacgaagatgaattggtacctggcgaagctggtatc
gatatctacaacctgactaagtacacgcgttcgaaccaaaacacatgtattaaccaacgt
ccaactgtacttcctggtgaaccagttgcacgcggcgatgttcttgctgacggtccttca
acagaccttggtgaactagctcttggccaaaacatgcgtatcgcattcatgccttggaac
ggttacaacttcgaagactcgatcttagtatctgagcgcgtagttcaagaagaccgtttc
acgacaatccacattcaagaactatcttgtgtggctcgtgatactaagctgggttctgaa
gagatcacagctgatattccaaacgtaggtgagtctgctctgtctaaactagacgagtca
ggtatcgtttacattggtgctgaagttaagggtggcgacatcctagttggtaaagtaacc
cctaaaggtgaaactcaactgactcctgaagagaagctactacgtgctatcttcggtgag
aaagcatctgatgttaaagatacttctctacgtgtaccaaactctgtttcgggtactatc
atcgatgtacaagtcttcactcgcgatggcgtagagaaagacaaacgtgcacttgaaatc
gaacagatgcagcttaaagaagctaagaaagatctaactgaagagttccaaattcttgag
ggtggccttcttaaccgtgttaaagctgtacttctgtctggtggttactctgaagctaag
cttgatactatcggtcgtaagcaatggctagagcaagttctagaagacgatgcgctacaa
acacagcttgagcaacttgctgagcagtgggatgagctaaaagcagacttcgataagaag
tttgaaactaagcgtcgtaaaatcactcaaggtgatgatctagcgcctggcgttcttaag
attgttaaagtttacctagcggttaaacgtcgtatccagcctggcgataagatggcgggt
cgtcacggtaacaaaggtgtaatctctaagattaaccctgttgaagacatgccatacgat
gaaaaaggtcagcctgtagacatcgtacttaacccactgggtgtaccatcgcgtatgaac
atcggtcaaatcctagaagtacacttaggtttggctgcgaaaggtatcggtgacaagatc
aaccaaatggttaaggaacaacaagaactgcataagttccgtgagttcctacagaaggtt
tacgatcttggcgatactcgtcagaaagttgatattgctgaactgtctgatgatcaagtt
cgtacactgatcaagaacctacgtggcggtctaccgattgctacaccagtgttcgacggt
gcttctgagtctctaatcaaagaactacttaaactgggtgatctgccagaatctggtcag
cttaaactgtttgatggtcgtactggtgattcgtttgagcgtcctgtaactgttggttac
atgtacatgctgaaactgaaccacttagttgatgacaagatgcatgctcgttcaactggt
tcttacagcctagtaactcagcaaccacttggtggtaaagctcagttcggtggtcagcgt
ttcggtgagatggaagtatgggcactagaagcatacggtgctgcatatactctacaagaa
atgctaacagttaagtcggatgacgttaacggccgtactaagatgtacaagaacatcgta
gatggtaaccatagcatggaacctggcatgccagagtcgttcaacgtactgttgaaagag
attcgctcgctaggtatcaacatcgagctagaagacgaagagtaa
DBGET
integrated database retrieval system
