Vibrio atlanticus: VS_3042
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Entry
VS_3042 CDS
T00812
Name
(GenBank) GGDEF family protein
KO
K20964
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VS_3042
Enzymes [BR:
vsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
VS_3042
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Ortholog
Paralog
GFIT
Motif
Pfam:
EAL
FIST
FIST_C
GGDEF
DUF8741
Motif
Other DBs
NCBI-ProteinID:
CAV20320
UniProt:
B7VMC9
LinkDB
All DBs
Position
1:complement(3186621..3189107)
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AA seq
828 aa
AA seq
DB search
MNMQSTSFQIQDIKCTQRELQKIDFHQHDNLLIQVFSSFEKDSVLAACQVIQSTFPNAKL
IGCSANHYISQGVILHKGLYVIVTRFEATSYTCGVVEYSEQPRRDSQAMWQQLECNADTQ
SIICFADRLQINNQDLFSAFEQSIYSLPVCGGASTITEHGRWVMLDGICYENAYVMLALH
SVELAITKGYYCEWNPIGRTFRVTGAQDNRLAELDGIPVREVYNRYLADGLEIPFEQLYN
FPLMVGEPKDQNTHLPLKVTEGGEIEFSGSFQVGDEVRFCYDHPSLTLEQIRLGVQQITS
HKPEQFFIYNCTSRIDFIDGNQEVEVFQALADTYGVYCMGELYQDNDQQRILHHSLTYLA
LREGEGKAVLPLETQPATNISPLFSLIRNALLDVDDMNNSMASKIQQQATALTASYRIDR
RTGLPNRSVLREKLSKMSTDSHLLALKVTTFGQINEKYGYRVGDKLLHDLSEYFQKALWQ
FFDEGCQLYSIGIGEWAVVFDSWVGQEHIHQRFSEFADQTEHVNFEPTGLPDIDYLSVSI
CAGIASRRDFPTTSIDDLLLKAIDARRSAVSQNKHLVSAKTLIQLEKHRQEQLGWLSCVS
RAVLNQNIVACSQLIVSAHSHQVESYECLVRIEEDGQLIAPGKFLPIIEGTHLYTRLSRQ
MITRTFDFMSQRTDSFSINLAPQDFSNEKTILHLEQAIKKISHPQRIGLEVLETEQIQDY
GRLIEVCNHFRDLGVNIIVDDFGSGYSNIDEILKLEPQVIKLDGSLIRNIDKDKKQRKIA
QQLVSLCQILNAKTVAEFVHNEQVCRIAEDMGVDYLQGYYFGQPQRLF
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
gtgaatatgcaatcgacctctttccagatacaagacattaagtgcacccagcgtgaattg
caaaagatagattttcatcaacatgacaatctactgattcaggtgttttcttctttcgag
aaagattcggtgttggctgcctgccaagtaattcagtcgactttccccaacgccaaattg
attggttgtagcgctaatcactacatcagccaaggtgtgatcctgcataaaggtctctat
gttattgttactcgctttgaggcgacgtcttacacttgtggtgttgtcgaatatagcgag
cagcctcgacgggatagccaagcgatgtggcagcagcttgaatgtaatgctgatactcaa
agcattatctgtttcgccgatcgcttgcagataaataaccaagatctattttcagcgttt
gagcagtcgatatattcattacctgtttgtggcggtgcatcgaccattacagagcatgga
cgatgggtgatgctcgatggtatttgctatgaaaatgcctatgtcatgttagcactgcac
agtgttgaactcgcaattactaaggggtattactgcgaatggaaccccattggtcgtacc
ttccgagtgactggcgctcaagataatcggctagctgaattggacggtatacctgtccga
gaagtctataatcgttacctcgctgacggtctcgaaatcccttttgagcaactgtataac
ttccccttgatggtcggtgaaccaaaagaccagaacactcacttaccgctcaaggtgaca
gagggcggagagatagaattcagtgggtcgtttcaggttggtgatgaggtgcggttttgt
tatgaccacccttcattgaccctagaacaaatccgactgggcgttcaacagattacttcc
cataaaccagaacagttttttatctataactgcacttcgcgcattgatttcattgatggc
aaccaagaggttgaggttttccaagcattagcggacacctatggcgtgtactgcatggga
gagctctatcaagataatgaccagcaacgaattttgcatcatagcctcacttatcttgcg
cttagggaaggtgaaggcaaggcggtattgccattagagacacaacccgcgaccaatatt
tcccctctgttttcattgatacgaaatgctctgcttgatgtcgatgacatgaacaacagc
atggcgagtaagattcaacagcaagcgaccgcattgaccgcgagctaccgaattgatcgc
cgtacaggtttacctaaccgaagcgtactgcgtgaaaaactgtcaaaaatgagtaccgat
agtcatttgttggctttgaaagtcacgacatttggccaaatcaatgagaagtatggctat
cgagtcggtgacaagcttctgcatgatttaagcgagtattttcaaaaggcgctgtggcag
ttctttgatgaggggtgtcagctctatagcattggtatcggtgagtgggcggtggtgttt
gatagctgggtggggcaagaacatattcatcagcgtttttctgaatttgcagaccaaacg
gaacatgtgaattttgaaccaacggggttgcctgatattgattatctgtcggtatccatc
tgtgcaggcatagccagccgtcgagatttccctacgacctcgattgatgatttgttgttg
aaggcgattgatgctaggcgcagcgccgtgagtcagaacaagcatctagtgagcgccaag
acgctcattcaattggagaagcatcgccaagagcagcttggttggctgtcgtgtgtcagt
cgcgcggtgcttaatcagaatattgtggcgtgttcccaacttattgtctcggcacacagc
catcaggtagaaagctatgagtgcttggttcgaattgaagaggacggtcagttgattgcg
ccgggtaagttcttgccaatcatagaaggaactcatctctatacgcgtctgagtcgccag
atgataacgcgtacctttgattttatgagtcagcgaaccgattcattctcaattaactta
gcgcctcaagattttagcaatgagaaaaccattcttcatcttgagcaagccatcaagaaa
atcagtcatccacagcgtattggtttagaggtgttggaaaccgaacaaattcaggattac
ggtcgcttgatcgaagtgtgtaatcacttccgcgaccttggtgtgaatattattgttgat
gactttggttccggctattcgaacattgatgagatattgaagttagaaccacaagtcata
aagcttgatggcagtttaattcggaatattgataaagataagaaacagcgcaagatcgct
cagcaactggtgagtttgtgccagatactgaacgctaaaacagttgcggagttcgtacat
aatgaacaggtgtgtcgaatcgcagaggatatgggtgtcgattacctgcaaggttactac
tttggtcagcctcaacgcttattctga
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