Vibrio atlanticus: VS_3071
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Entry
VS_3071 CDS
T00812
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vsp
Vibrio atlanticus
Pathway
vsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VS_3071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsp03021
]
VS_3071
03019 Messenger RNA biogenesis [BR:
vsp03019
]
VS_3071
Transcription machinery [BR:
vsp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VS_3071
Messenger RNA biogenesis [BR:
vsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VS_3071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
CAV20338
UniProt:
B7VME7
LinkDB
All DBs
Position
1:complement(3214678..3215961)
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AA seq
427 aa
AA seq
DB search
MTKQTSTTMNLTELKNRPVSELVKLSESLGLENQARLRKQDIIFSILKAHAKSGEDIFGD
GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIRPPKDGERYFA
LLKVNTVNYDKPDNARNKILFENLTPLHANERMVMEAGNGATEDITARILDLASPIGKGQ
RGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTF
DEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAN
ALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEK
RVFPAIDFNRSGTRREELLTKNDELQKMWILRKIVHPMGEIDAMEFLIDKLAMTKTNDEF
FDAMRRQ
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
ttgactaaacaaacttccaccactatgaatcttactgaactgaagaacagacctgtgtct
gaacttgttaaacttagcgaaagcctaggtcttgaaaatcaagctcgcttaagaaaacaa
gacattatcttctccatccttaaagcacacgcaaaaagtggtgaggacatctttggtgat
ggtgttctagaaattcttcaagacggttttggcttcctacgtagcgcagacagctcatac
cttgctggtcctgatgatatttatgtatcaccgagccagattcgtcgttttaaccttcgt
acaggtgactctattggcggtaaaatccgtccacctaaagatggcgaacgctactttgct
ctgcttaaagtaaatacggttaactacgataaaccagataacgctcgtaacaagattctt
ttcgaaaaccttactcctcttcacgccaacgaacgtatggtgatggaagcgggtaatggt
gcaactgaagatatcacagctcgtattcttgaccttgcttctccaatcggtaaaggtcag
cgtggtctgattgttgctccgccaaaagcgggtaagacaatgcttctgcaaaatattgct
caaagcattgctcgtaaccatcctgagtgtgaactaatggttctacttatcgatgagcgt
ccagaagaagtaacagaaatgcagcgcctagttaaaggcgaagtaatcgcatcgacgttt
gatgaaccagcatctcgccacgtacaagtagcagaaatggtaatcgagaaggcgaagcgt
cttgttgaacacaagaaagacgtggttatcctactggattcaattactcgtcttgctcgt
gcttacaacactgtgattccttcatcaggtaaagttcttactggtggtgttgatgcgaat
gctctacatcgtccaaagcgtttcttcggtgcggcacgtaacgtagaagaaggcggtagc
ttaactatcatcgcaacagcactggttgatactggttctaagatggatgaagttatctac
gaagaattcaaaggtacaggtaacatggaactgcaccttaaccgtaagattgctgaaaaa
cgcgtattcccagcgattgatttcaaccgatctggtactcgtcgtgaagagcttcttacc
aagaacgatgaactacagaagatgtggattctgcgtaagattgttcacccaatgggcgaa
atcgatgcgatggaattccttatcgacaagctagcaatgactaaaacgaacgatgagttc
tttgacgcaatgcgtcgtcagtag
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