Vibrio atlanticus: VS_3073
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Entry
VS_3073 CDS
T00812
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VS_3073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsp03019
]
VS_3073
Enzymes [BR:
vsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VS_3073
Messenger RNA biogenesis [BR:
vsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VS_3073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
SNF2-rel_dom
CMS1
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
CAV20340
UniProt:
B7VME9
LinkDB
All DBs
Position
1:3216575..3217885
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AA seq
436 aa
AA seq
DB search
MKKTHITEQKFADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVASTGIKAALAYG
GESYDKQLGKIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILE
QFTKGDVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFA
CEDYAINLPPIEEYIEHAIPMSDYDASALLEDLPAPMRLRTRNPQQRRSNNNGPRNGNRK
PNQNRRPRQPRHNKEA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgacttggatttacttccgcaagtc
attgaaggattggagaaaaaagggttcgactattgtacccctatccaagccttggcgctc
ccggtactgctcaccggccaagacattgcaggccaggcccaaacgggtactggtaaaacg
cttgcgtttcttactgctacttttaatcacctgctaaaaacacctgagcatgaaggccgt
aagcctaaccagccacgtgcgattattatggcaccaacgcgtgaactcgcgattcagatc
tacaacgatgctgactctctggttgcaagcacaggtatcaaggcagcattagcttacggt
ggcgaaagctacgacaagcaactaggtaagatcgaagaaggcgctgatatcttaattggt
acgactggccgcatcatcgatttctacaagcaaaaggtatttaaccttaaccacattcaa
gcagttgttcttgacgaagctgatcgcatgttcgatcttggtttcatcaaagacatccgc
ttcttgttccgtcgtatgcctgagccaaaagatcgcctaaacatgttgttctctgcgaca
ctgtcttaccgcgtacaagaacttgcattcgaacatatgcacaacccagagcacgtggtt
gttgaacctgagcgcaagactggtcaccgtattcaagaagagctgttctacccttctaac
gaacataagatggctcttttacaaacgttaatcgaagaagagtggccagatcgcgcaatc
atcttcgctaacactaagcacaagtgtgaatcagtttggggccacttggctgccgatggt
caccgtgttggcctactaactggcgatgttcctcagaagaaacgtgaaaaaattcttgag
cagttcaccaaaggtgatgttgacctgcttgtcgcaacagatgttgcagcacgtggccta
cacatccctcaagtaacacacgtattcaactttgacctacctgacgattgtgaagattac
gttcaccgtatcggccgtacaggtcgtgctggtgaaagcggtcactcgatcagctttgct
tgtgaagattacgcaatcaacttgccaccaatcgaagaatacattgagcacgctatccca
atgtctgactacgatgcttctgcactactggaagatctgccagcaccgatgcgcttacgt
acacgtaacccgcaacaacgccgctcaaacaacaatggcccacgcaacggtaaccgtaaa
ccaaaccagaatcgtcgcccacgccaaccgcgtcataacaaggaagcttag
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