Vibrio atlanticus: VS_3077
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Entry
VS_3077 CDS
T00812
Name
(GenBank) RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VS_3077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsp03019
]
VS_3077
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_3077
Enzymes [BR:
vsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VS_3077
Messenger RNA biogenesis [BR:
vsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VS_3077
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VS_3077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
CAV20344
UniProt:
B7VMF3
LinkDB
All DBs
Position
1:complement(3220820..3222658)
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AA seq
612 aa
AA seq
DB search
MTATLIAEQTPTPANDAQDILQDVFGYQSFRDGQQEVIDLAVEGKDSLVIMPTGGGKSLC
YQIPALVRDGLTLVISPLISLMKDQVDQLKANGVAAECINSSMPRDQLLSVFNRMNSGQL
KMVYASPERVLMRDFIERLQGLPLSMIAVDEAHCISQWGHDFRPEYASLGQLKQYFPHVP
YMALTATADDATRKDIISRLQLVDPHTHLGSFDRPNIRYNLVEKHKPVSQVVRYLETQKG
NCGIIYCGSRKKVEMVTEKLCNNGIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAF
GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRMLDEKE
EGPQKQVEMHKLNAMSAFAEAQTCRRQVLLNYFGEYREKQCGNCDICLDPPKHFDATQEA
QKALSCVYRVNQSFGMGYVVEVMRGMQNIRVRDNGHDKLSTYGIGRDHSHDYWISIFRQL
IHKGLLFQNITRNSTLQLTEEARPLLRGEMSLELAVPRLDTAVRNAKSDKLSSKNYDKKL
FAKLRKLRKSIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLDKYADPF
LDLIQEHITTHG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccactctgattgctgagcaaacaccaactcccgcgaatgatgcgcaagatatc
ttacaagatgtctttggttatcaaagctttcgtgatggtcagcaagaggtcatagaccta
gccgttgaaggcaaagacagcttggtgattatgccaaccggtggtggtaagtctctgtgt
taccagatcccggctttagtgcgtgatgggctgactttggttatctcaccgctcatttca
ttgatgaaagaccaagttgaccagttgaaagctaatggtgtggcggctgagtgcataaac
tcatcgatgccacgcgatcaactgttgagcgtgttcaaccgcatgaactcaggccaattg
aagatggtttatgcttcaccagagcgtgtgttgatgcgtgactttatcgagcgtctacaa
ggcttaccgctttcgatgattgcggtcgatgaagcgcactgtatctctcagtggggacac
gatttccgccctgaatatgcatcattaggccagcttaaacagtattttccgcatgtgcct
tatatggcgctaacggcaaccgctgatgatgcgacgcgcaaagatattatctcgcgtttg
cagttggtggatccgcatacgcatttaggtagcttcgatcgccctaatattcgttacaac
ttggttgagaagcataagcccgtgtcacaggtggttcgctacctagaaacacagaaaggc
aattgcggcatcatctactgtggtagccgtaagaaagtggagatggtgaccgagaagctg
tgcaataacggtattcgcgcagcgggttatcatgctggcatggacaccgatgaacgtgct
tacgttcaagaagccttccagcgtgatgatattcagatcgttgtcgcgactgtagccttt
ggtatgggcatcaacaaacccaatgtacgcttcgtggtgcactttgatattccacgcaat
atcgaatcttactaccaagagacaggccgcgcaggtcgtgatggcttgcctgctgaagct
atgatgttgtttgacccggctgatatgggttggctgcgtcgtatgctggatgagaaagaa
gaaggcccgcaaaaacaagttgagatgcacaagctgaacgcgatgagcgcctttgctgaa
gcgcaaacctgtcgtcgtcaggttctgttgaactactttggcgaatatcgcgagaagcaa
tgtggcaactgcgatatctgcttagatccaccaaaacactttgatgcgacccaagaggca
cagaaggcgttgtcttgtgtgtaccgcgttaatcagtcatttggtatgggctatgtggtg
gaagtgatgcgtggtatgcagaacatccgtgtacgcgataatggtcacgataagctgtct
acttacggtatcggccgcgaccatagccatgattactggatcagtatcttccgtcagctg
attcacaaaggtttgttgttccaaaacatcactcgtaactcgacattacagttaacagaa
gaagcccgcccgttactgcgtggtgagatgtctttggagttggctgtacctcgtttagat
acagcagtgcgtaatgctaagtccgataagttaagcagcaagaactacgataagaagttg
tttgccaaactgcgtaagctgcgtaagtcgatcgctgatgaagatggcttgccaccatac
gtggtattcagtgatgcgacgctgattgatatggccgaaatcctacccacatcttatggc
gagatgctggcagtcaatggcgttggtcagcgtaaactcgataagtacgcagacccattc
ttagatttgattcaagagcacatcaccacacacggttaa
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