Vibrio atlanticus: VS_3084
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Entry
VS_3084 CDS
T00812
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03420
Nucleotide excision repair
vsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VS_3084
03430 Mismatch repair
VS_3084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_3084
Enzymes [BR:
vsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VS_3084
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VS_3084
MMR (mismatch excision repair)
Other MMR factors
VS_3084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
PhoH
Motif
Other DBs
NCBI-ProteinID:
CAV20351
UniProt:
B7VMG0
LinkDB
All DBs
Position
1:complement(3228644..3230818)
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AA seq
724 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSSSGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
IRLLRRLIKAQNLDEKQWPAKQASWWINGKKDEGLRPSHIDAYHDPITQTWLKIYSAYQE
ACDRAGLVDFAEILLRSHELLRDKKHIREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
DCRVMIVGDDDQSIYGWRGAKIENIQKFLDEFPGASTVRLEQNYRSTKTILQASNELISN
NTERMGKELWTDGNDGEPISVYSAYNELDEARFTVSKIKEWQEKGGALEDTAMLYRNNAQ
SRVLEEALIQGGLPYRIYGGMRFFERQEIRDALSYLRLMSNRSNDAAFERVVNTPTRGLG
DKTLETIRLAARDRGATMWEASVALIEEQVLPGRAAGALSRFIELINALEDDTIELRLHE
QTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEADEMSMLTAFLTHAA
LEAGEGQADEFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMEKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPASSGRF
SQTAVKENFNETGFSLGSRVKHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYAR
LEQL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatagatccttcgcttttactcgatggcctaaacgacaaacaacgtgaggcggtcgca
gcacctttagaaaacctacttattctggcaggtgctggcagtggtaaaacgcgagtgttg
gtgcatcgtatcgcttggttacaaagcgtagagcaagcatcaccgttctctatcatgtcg
gttaccttcaccaacaaagcggcagcagagatgcgtggtcgtattgaagagttgatgatg
ggtagctcgtctggtatgtggaacggcaccttccacggtatctgtcaccgcattcttcgt
gctcactacctagatgcaaaactgccagaagatttccagatcattgattcagatgatcag
attcgtttgctgcgtcgcttaatcaaggcgcaaaaccttgatgaaaaacagtggccagcc
aagcaagcttcttggtggatcaatggcaagaaagacgaagggctgcgcccaagtcacatt
gacgcctaccatgatccaataactcaaacgtggttaaagatttactctgcttaccaagag
gcatgtgatcgtgctggcttggtcgactttgctgaaatcttgttgcgatcgcatgagcta
ttgcgcgataagaaacacatccgcgagcactaccaagctcgctttaagcacattcttgtc
gacgaattccaagataccaacaacatccaatacgcttggcttcgcatgatggcaggcccg
gattgtcgcgtgatgatcgtgggtgatgatgaccaatctatctatggctggcgtggcgct
aaaattgaaaatattcagaagttcttggatgaattcccaggcgcttcaacggttcgactc
gaacaaaactaccgttcaaccaaaaccattctgcaggcgtcgaatgagcttatctcgaac
aacactgagcgtatgggtaaagagctgtggactgatggcaacgatggcgagccaatctct
gtttactcagcttataacgagttagatgaagcgcgtttcacagtcagtaaaatcaaagag
tggcaagagaaaggcggtgcgctagaggataccgcgatgctgtatcgtaataacgcccaa
tcgcgtgttcttgaagaagctttgattcaaggtggtctaccttaccgaatctatggcggt
atgcgattcttcgagcgtcaagaaatcagagatgccttgagctacctgcgcttaatgagt
aaccgcagcaatgatgcggcattcgagcgtgtcgtcaatacgcccactcgtggcttgggt
gataaaacgttagaaacgattcgtcttgcagcacgtgatcgtggtgcaaccatgtgggaa
gccagtgttgctctgatagaagaacaagtattaccaggccgtgctgcgggtgccttgagc
cgctttattgagcttatcaatgcacttgaagatgacaccatagaactgagacttcatgag
caaaccgaccacgtgatcaaatcgtcgggcttgtttgcgatgtatgagcaagagaaaggc
gagaagtcgaaggcacgtattgagaacttggaagaattggtaacggcaacgcgtcagttt
gaaaaaccagaagaagcggatgaaatgagcatgctaacggcattcttaactcatgcggct
ttggaagcgggtgaaggtcaggctgatgaatttgatgatgcggttcagctcatgactctg
cacagtgccaaaggcctagagttcccaatggtattcatggtgggtgtcgaagaaggcatg
ttcccaagccagatgtcggccgaagaagcagggcgtttagaagaagagcgccgcttgtgt
tacgtaggtatgactcgtgcgatggagaagctttacatcacttatgctgagatgcgtcgt
ttgtacggtcaagataaataccataagccatcacgctttattcgtgagttgccggagacc
tgtctggatgaagtacgtatgaaagcgcaagtcagccgccctgcaagcagtggtcgcttt
agccaaaccgctgtgaaagagaacttcaatgaaacaggctttagcttgggttctcgcgtg
aagcatcctaagtttggtgaaggcactatcatcaacttcgaaggaagtggcccacaaagc
cgagttcaggtggcgtttaacggtgaagggattaagtggttagtaacggcttacgcgcgt
ttagagcagctttaa
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