Vibrio atlanticus: VS_II0321
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Entry
VS_II0321 CDS
T00812
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VS_II0321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsp03019
]
VS_II0321
Enzymes [BR:
vsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VS_II0321
Messenger RNA biogenesis [BR:
vsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VS_II0321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAV25741
UniProt:
B7VQT9
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All DBs
Position
2:364346..365917
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AA seq
523 aa
AA seq
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MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL
EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL
RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ
NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKD
NDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVAT
DIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIER
LIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAGKN
KRHVAGNGSAPKRKPNSGNKASDSNSAAAGDDKSLRNNGSNYKRGNKPSTNSSGKPGGAG
KPKKSGFGGSNGSSKPSNKSAGNKPTGNKPSPSRSRSKPASQK
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctcccttggcctttctgaaccgatccttaaagctattgaagcacaaggt
tacgataagccatcaccaatccaagagaaagccgtaccagctgtcctaacgggcaaagat
gtaatggccgctgctcaaacaggtacaggtaaaactgctggcttcacgctacctattctt
gaaatgttatcaaaaggccctcgcgtacgtcagaaccaagttcgtgcactagtgctaaca
cctacccgtgaacttgctgcgcaagtgaatggcagcgtagttaaatacggtattaactta
ccgcttacttctacggtcgtgtttggtggcgtgaaaattaaccctcagatgcaaaaactt
cgtaaaggtagtgatgtgttggtggcaacaccgggtcgtctacttgacctatacaaccaa
aatgcagtgcgttttgatcagcttgagattctagtattagatgaagctgatcgcatgtta
gacatgggtttcattcgcgacatccgtaagatcttggctttcctacctaagaagcgtcag
aacttactgttttctgcaacgttctctgatgatattcgtagcttggctaaaggcttagta
aataacccagttgaaatctcggtaagccctgcaaactcaacagcaccaactgttgaacaa
agtatttatccagtagataaaaagaaaaaagcgccaatgctagctaagctgatcaaagat
aatgattggcgacaagtgttggtgttcagcaaaacaaaacacggtgcaaacaagcttgct
cgtttccttgaagagcaagacatcacttctgctcctatccatggtaacaagagccagggc
gcgcgtactaaagccttagagaactttaaaaccggtaaggtacgagtactcgtagcgacc
gatatcgctgctcgtggtattgatatcccacaacttcctcaagtggttaacttcgacctt
ccaaacgtatcagaagattacgttcaccgtattggtcgtactggccgtgctggtgaagtg
ggtaaagcaatttcattggtttgtgcagatgaagtgggtgagctattcggtattgaacgc
cttatccaacaagtactggagcgtcgtgaactggaaggttttgcacccgtaaacaaatta
ccagaatctcgcttggattcgcgtccgattaagcctaagaaaccgaaaaagacacgcgaa
cactcggatggccaacgttctggtgagaatgctcgcggccataagccagcaggcaagaac
aagcgtcatgtagcaggtaatggatctgctccaaagcgtaagcctaactcaggcaacaaa
gcttcagacagcaactctgcagctgctggtgatgataagtctttaagaaataatggcagc
aactataagcgtggtaataagccttctacgaatagttctggcaagccaggtggtgcaggt
aaacctaaaaagtctggtttcggtggaagtaatggttcaagcaaaccgtctaacaagtca
gcaggtaacaagcctacaggtaacaaaccttcaccatctagaagccgttctaagcctgca
tctcagaaatag
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