Vibrio atlanticus: VS_II0776
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Entry
VS_II0776 CDS
T00812
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VS_II0776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsp03019
]
VS_II0776
Enzymes [BR:
vsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VS_II0776
Messenger RNA biogenesis [BR:
vsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VS_II0776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
CAV26511
UniProt:
B7VS27
LinkDB
All DBs
Position
2:complement(849634..851040)
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AA seq
468 aa
AA seq
DB search
MCCSGGSLLKHERKGRFSYVILLKYVNIARYYFSFEFLQLMTNTTTPTNFSDLGLISPLM
ARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRS
GKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDI
LVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSA
TFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALI
FVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLD
IEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLIDHEDYHHFTIIEKKNKIRLER
EQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtgttgtagtgggggctcattgctaaaacacgagagaaaggggcgatttagttacgta
atactgctgaaatacgttaatatagcgcgctattattttagctttgagttcctgcaatta
atgactaacaccacaacaccaaccaacttctctgatcttggcttaatctctcctttgatg
gctcgtcttaccgagcttgaataccaacagccaacgcctatccaagcgcaagttattcca
agtgtgttagcaggacgcgacctaattgcaggcgcaaatacaggttcaggtaaaaccgca
gcctttgcacttccactgttacaacaaatccatgaagatgcacctctggaccgtcgttca
ggcaaaggtaactatgtttctggccttatcttggttcctacacgtgagcttgctaagcaa
gttgccgatagcgttaagtcttacgcagtacatttcaacggtgcaatcaaaactgtttgt
gtattcggtggtgtatcggtgaacactcagatgcaagcgttacgtggcggcacagacatc
ttggtggcaacgccgggtcgtttgcttgatctaatctccagcaacgctatcaaactcgat
aaagtaaaaacgttagtgcttgatgaagcagaccgtatgttgagccttggctttaccgaa
gagctcgacgcgatcttgaagctattgccgagcaagaagcaaaccttgttgttctctgcg
actttccctgagcaagttaaaacgctgactcacgaattactgaacgacccaattgaagtc
caacttcaaagtgctaatgcgagcacactagttcagcgagtattcgaagtcgaaaaaggc
cgtaagacagctttgttagcgcacctgattcaacaacacgaatggcgacaagctctgatc
tttgtgaatgcgaagaacagctgtgagcatttggctgataagctatacaagcgcggtatc
attgcggaagtattccacggtgataaaggtcagggttcacgtactcgtatcctagaagat
tttaaatctggcgagattgacgttctgatcgcgacagacatcgcagctcgtggtctggat
attgaaaagcttcctgtagttatcaactttgatttaccacgtagtccatcagactacatg
caccgtattggccgaagcggtcgttcaggtgaggttggtttagcattatctttgatcgac
cacgaagactaccatcacttcacaatcatcgagaagaagaacaaaattcgtcttgagcgt
gagcaaatcgaaggctttgaagtggatgaagaagcaaccgctgcacttgttgctgcgtta
aaacccgttgctccaccggctggtacaggcaagaagaaaaagaagaaagcacctaaaaac
caagacgtttggttgagaaataactaa
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