Vibrio atlanticus: VS_II1138
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Entry
VS_II1138 CDS
T00812
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vsp
Vibrio atlanticus
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsp03016
]
VS_II1138
Enzymes [BR:
vsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VS_II1138
Transfer RNA biogenesis [BR:
vsp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VS_II1138
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
DUF7716
Motif
Other DBs
NCBI-ProteinID:
CAV27060
UniProt:
B7VSB8
LinkDB
All DBs
Position
2:1277786..1279792
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AA seq
668 aa
AA seq
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MFQDNPLLAQLKQQIQETLPKKEGTIKATEKGFGFLEVDSKTSFFIPPPYMKKCVHGDKV
IAIIRTEKEREVAEPEELIEQGLTRFIARVKLFKGRLNVVPDHPQLKKLQLKAKAKKGLN
PETLKEGDWVVAHIVQHPLKGDNGFLAQISEKITDADDKIAPWWVTLAQNDLPNSEPEGI
DDWQIKDDADLERVDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIADPTAYIS
PDDAMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSKDGVIGD
DINFFAANIKSHARLAYDHVSDWLETGASEKWQPSEEIAAIVSDLHQFAQARSAWRSANA
VVFPDRPDYRFELSEDNDVVAIHADMRRSANKLVEESMISANICAGRVLKESFNQGVFNC
HSGFKAEKLTDVLELVNPEAETPFTEEQIVSLEGFATLRRWLGSLDNSYYDNRIRKFQAY
SEISNEPAPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILRKTPTQTPDETIGDELAL
HRRHHGMAERNVGDWLYARTLANAPVEETRFQAEIFDINRAGMRVRLLENGAAAFIPGSL
ILNNKERIECNGDMGTVSIDKEMVYKLGDVLEVVLSEVNQENRNLVAKPTQVFADLPSGP
ETTNETEA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatcctctactcgctcaactcaaacagcaaatccaagaaaccctccct
aaaaaggaaggtacaatcaaagccactgaaaaagggtttggttttctcgaagtcgatagc
aaaactagcttcttcatcccaccgccgtacatgaaaaaatgtgtacacggtgacaaggtg
attgccatcattcgcactgagaaagagcgcgaagttgcagagccagaggagttgattgaa
cagggtctaactcgttttattgcacgagttaagcttttcaaaggtcgattgaacgttgtt
ccagatcacccgcaactgaaaaaactgcagcttaaagcgaaagcaaagaagggtttgaac
cctgaaacgcttaaagaaggcgactgggttgttgctcatatcgttcaacacccgttaaaa
ggtgacaacggcttcttagctcagatctctgagaaaatcacagacgctgacgacaaaatc
gcgccttggtgggtaacgctagcgcaaaatgacctaccaaacagcgaacctgaaggcatc
gacgactggcagatcaaagacgacgctgatcttgaacgtgtagacatgactcacgtccct
tttgtgactatcgatggcgaaagcacaaaagatatggacgatgcgctttacgctaagaag
aaagagaacggtgatttcgaactgactatcgcaattgctgatcctaccgcttacatctct
ccagatgatgcaatggataaagtggctcgcgagcgtggtttcactatttacctgcctggt
cgtaacatcccaatgttgcctcgcgatctagctgacaacttatgttcactaatagagaac
gaagttcgcccggcactttgctgcacagtaacggtatctaaagatggtgttatcggtgat
gacattaacttcttcgctgcaaacatcaaatctcacgctcgtcttgcttacgaccacgta
tcagactggctagaaacaggtgcatccgagaaatggcaaccgtcagaagagatcgctgcg
attgtttctgaccttcaccaatttgctcaagcacgttcagcgtggcgttctgcaaatgcg
gttgtgttcccagatcgccctgactaccgctttgagcttagcgaagataacgatgttgtt
gctatccacgctgacatgcgtcgcagtgcgaacaagttggttgaagaatctatgatcagc
gcgaacatctgtgcgggtcgagtattaaaagagagctttaaccaaggtgtctttaactgt
cactctggttttaaagctgagaaattaacagatgttctggagctagttaacccagaagca
gaaacgccgtttacagaagagcagatcgtttctctggaaggttttgctactctgcgtcgt
tggttaggttctttagacaacagctactacgataaccgtattcgtaaattccaagcatac
agcgagattagcaatgaacctgcgccgcactacgcaatgggattagacatttacgcaact
tggacttctccaattcgtaaatacggtgacatgattaaccaccgcatgcttaaagcacac
atattacgtaaaacgccaactcaaacaccagacgaaaccattggtgatgaacttgctctg
caccgccgtcaccacggtatggctgaacgtaacgttggcgattggttgtatgctcgtact
ctagcgaacgctccagttgaagaaactcgtttccaagcagagatcttcgacattaaccgt
gctggtatgcgtgtacgtctacttgaaaatggtgctgcagcatttatccctggttctctc
attcttaataataaagaaagaatagagtgcaacggtgatatgggtactgtatctatcgat
aaagaaatggtatacaaactgggagacgttttagaagtagttctctcagaagttaatcag
gaaaaccgtaacttggtagcaaaacctacacaagtttttgcggacttgcctagcgggcct
gaaacgacaaatgaaaccgaagcctaa
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