Vibrio atlanticus: VS_II1158
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Entry
VS_II1158 CDS
T00812
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VS_II1158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsp03019
]
VS_II1158
Enzymes [BR:
vsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VS_II1158
Messenger RNA biogenesis [BR:
vsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VS_II1158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
UvrD-helicase
Gemin6
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-ProteinID:
CAV27095
UniProt:
B7VSD8
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All DBs
Position
2:1301316..1302515
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AA seq
399 aa
AA seq
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MPFSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPIL
EMLSKGETQRKKRIRAVILTPTRELAIQVEQNITKYAKFLNLTSLAMYGGVSYQHQKDRL
IEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQNIQ
NLLFSATLSTPVRALAKSAISEAEEISIAKTDASKANIEQWLVTVDKDRKSALLSHMITD
GEWDQALIFIETKHGAAKLVAQLEKRGIEAEAFHSGRSQAIREKILADFKKGRLKYLVAT
GVAARGIDIDNLSRVVNYDIPFPADDYVHRIGRTGRADASGEAISFLSKDNFKNLCIIEK
RLGHLIERRVVEGFEPRKEVPISVLNFVPKKKRDLQQPE
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgccattttccaagcttggattaagctcacctattgttaaagccgttgcaaaacaaggc
tatgaaaagccaacctctattcaagaaaaagcaattccgattgtgctttctggtaagaac
ctaattgctgctgcacaaacaggtacaggtaaaactgcgagctttgttctccctatctta
gaaatgctaagtaaaggtgaaacacaacgtaaaaaacgcattcgcgctgttattctgaca
ccaactcgtgagcttgcgattcaggttgaacagaacattactaagtacgcgaagtttcta
aacctaacatcattagctatgtacggtggcgtatcttaccaacaccagaaagaccgcttg
attgaaggcgtcgatattcttgtggcaacaccaggtcgtttgatcgatatgtacggacaa
cgtgccgttcactttgatgaagtagaagttctggttcttgatgaagcagaccgcatgcta
gacatgggtttcattgaagacatcaacaagatcatcgcgcgtttgccacaaaacattcaa
aatctattgttctcagcaacgctatcaacgccagttcgtgcgctagcgaaaagcgcaatc
agtgaagcagaagagatttcaattgccaaaactgacgcttctaaagcgaacatcgaacaa
tggctagttactgtagataaagaccgcaaatctgcactgttaagccacatgatcactgac
ggtgagtgggaccaagcgcttatctttatcgagaccaaacacggcgcggctaagctagtt
gcccaacttgaaaagcgtggtatcgaagcggaagctttccacagtggacgtagccaagcg
attcgtgaaaagattctggctgatttcaaaaaaggccgtctaaaatatctagttgcgaca
ggtgttgctgctcgtggtatcgatattgataatctaagccgcgtagtcaactacgacatc
ccattcccagcggatgactatgttcaccgtattggtcgtacaggccgtgctgatgcgtct
ggtgaagcgatctctttcctatcgaaagataacttcaagaacctgtgcattatcgaaaaa
cgtcttggtcacttgattgagcgtcgcgtcgttgaaggtttcgaaccacgcaaagaagtg
ccaatctctgtattgaacttcgtgcctaaaaagaaaagagacctacagcaacctgagtaa
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