Vibrio spartinae: Vspart_00345
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Entry
Vspart_00345 CDS
T07037
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vsr
Vibrio spartinae
Pathway
vsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vspart_00345 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsr03019
]
Vspart_00345 (rnr)
03016 Transfer RNA biogenesis [BR:
vsr03016
]
Vspart_00345 (rnr)
Enzymes [BR:
vsr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Vspart_00345 (rnr)
Messenger RNA biogenesis [BR:
vsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Vspart_00345 (rnr)
Transfer RNA biogenesis [BR:
vsr03016
]
Prokaryotic type
tRNA degradation factors
Vspart_00345 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rho_RNA_bind
RNase_II_C_S1
Rota_NS35_C
Motif
Other DBs
NCBI-ProteinID:
QMV13138
UniProt:
A0ABX6QVC2
LinkDB
All DBs
Position
1:396508..398949
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AA seq
813 aa
AA seq
DB search
MSDTTQNDPFADREANNYDNPIPSREFILEFLAQANVPMNRNDLFEVLQLSGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMIKGYVIGHKDGYGWVRPEGVRGRDEDIILPHH
QMRTLIHGDYVLIQPNGTDKRGRKEGRLVRILEERNGQIVGRFFFEHGYSYVVPDDSRIS
HDILIPDEARASARMGNVVVIEITDRGSRSRGMMGKVSDVLGESMAPGMETQIAIRTHQI
PHEWPEAVEQQVKQFSEDVPEEAKQGRVDLRTLPLVTIDGEDARDFDDAVYCEAKKGGGW
RLWVAIADVSYYVRTDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISATGKLSSYKHYEAVMNSHARLTYNKVAAILAGEEELRERYEPLVPHLEELYRM
YQVLKSERENRGAIEFETVETKFIFNAERKIERIEPLVRNDAHKIIEECMILANIASASL
VEKMKEPALFRIHETPGEERLVGFRDFLGELGLNLTGGLEPTPTDYATLMKQVANRPDHE
LIQTMLLRSMKQAVYNADNCGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEKGQN
QDRWTPTGGYHYSFDDMNYYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEVLDGVIA
NVTGFGFFVRLTELHIDGLVHISSLANDYYQYDPIGQRLIGESFGLIYRLGDAVKVKVQA
VNLDERHIDFELVETSRKLRGEGKTAKKREAEAKQGKKGAPRRRGKAIPSTEPVKNPNNE
NDRNKTVKKKSKTENVRKKKSRLRQSKSAKTDK
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacactactcaaaacgatccgtttgctgatcgtgaagcaaataattatgacaac
ccaattcccagtcgcgaatttattttggaatttctcgctcaggcgaatgttccgatgaat
cgcaatgacctgttcgaagtgttacaactttcaggagaagaacaatacgaagggttaaga
agacgtttgagagccatggaaagggatggacaactggtcttcacgcgccgccagtgctat
gcactgccggaaaaactggaaatgattaaagggtatgtcatcggtcataaagatggatat
ggctgggtcagaccggagggcgtccgggggagagatgaggatattatactgccacatcat
cagatgagaacgctgattcatggggactatgtgctgattcaaccgaatggcacggataaa
agaggtcgaaaagaaggtcgtttggtcaggatattagaagaaagaaacggccagattgtg
gggcgattcttctttgaacatgggtattcttacgtcgtaccggatgactcccggatcagt
catgatatcttgattcccgatgaagctcgcgccagcgctcgaatgggcaatgtcgttgtt
atcgagattacagatcgaggcagccgctctcgtggcatgatggggaaggtgagtgatgta
cttggtgaaagtatggcgcccggtatggagactcagattgctattcgaacccatcagatt
cctcatgagtggccggaagcggtcgaacaacaagtgaagcagtttagtgaagacgtccca
gaagaagcgaaacaggggcgggtagatttgagaacgttgccactggttacgattgatggt
gaagatgcccgagactttgatgatgctgtctattgtgaggccaaaaaaggcggtggttgg
cgtctctgggttgcgattgccgatgtgagttattatgtcagaaccgattctgcccttgat
aaagaagcgatcaatcgtggtaattcggtctactttccatctcaggttgtgccgatgtta
ccggaggttttgtcaaacgggctctgctctctgaatccacaggttgatcggttatgtatg
gtttgtgagatgaccatctcagcaacagggaaactctcaagctataaacattacgaagcg
gttatgaactctcatgcgcgactgacctataacaaagttgccgcgattttagcgggtgaa
gaggaacttcgtgagcgttatgaaccgttagtccctcatctggaagagttataccggatg
tatcaggttctgaaaagtgagagagagaaccgaggcgcaatcgaatttgaaacggtagaa
acgaagtttatctttaatgctgagcggaaaattgagcggattgaaccgttagtccgtaat
gacgctcataaaatcatcgaagagtgcatgattctggcgaatattgcatcggcttctttg
gttgaaaaaatgaaagaacctgccttattccgaattcatgaaactccgggagaagagcgc
ttggtaggatttcgcgattttctcggcgaattgggactgaatttgaccggtggattagaa
cctactccgacagattatgccactttaatgaaacaagtcgcgaatcgccccgatcatgaa
ctgatccaaaccatgttactccgctcgatgaagcaagccgtgtataatgcagacaactgt
ggtcactttgggttagcgttgaaacgttacgcgcactttacttccccgatccgccgttat
cctgatttgttattgcatcgtgcaattaaatatcttattgccaaagagaagggacaaaat
caggatcgttggacgccaacagggggatatcattattcattcgatgatatgaactattat
ggtgaacagtgttcaatgacagagcgccgcgcagatgatgcaacacgagaagtatccgac
tggctgaaatgtgaatatatgcaagatcatgtcggtgaggtgttggatggtgtgattgct
aatgtcactgggtttggattttttgttcgtttgactgagttacatattgatggtctggtg
catatttccagcttggcaaatgattactatcagtatgacccgattggtcaacgcctgatt
ggtgaaagtttcggattgatttaccgactaggcgatgctgtcaaagttaaagttcaggcc
gtgaatctggatgaacgtcatattgactttgaattagtcgagacaagtcgtaagctacgc
ggtgaagggaaaacagccaagaaacgcgaagcagaagcaaaacaagggaaaaaaggggca
ccccgacgtcgaggaaaagcgataccgagtactgaaccggtgaaaaatcctaataatgaa
aatgatcggaataaaacggtcaaaaagaaaagcaagactgagaacgtccgtaagaaaaaa
tcgcgtcttcgtcaatcaaaatcagccaagactgacaaatga
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