Vibrio spartinae: Vspart_01800
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Entry
Vspart_01800 CDS
T07037
Symbol
hrpB_2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vsr
Vibrio spartinae
Brite
KEGG Orthology (KO) [BR:
vsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsr03019
]
Vspart_01800 (hrpB_2)
Enzymes [BR:
vsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Vspart_01800 (hrpB_2)
Messenger RNA biogenesis [BR:
vsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Vspart_01800 (hrpB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
ResIII
T2SSE
HA2_N
nSTAND3
ABC_tran
NACHT
AAA_30
LYTB
SLFN-g3_helicase
PhoH
Zeta_toxin
TsaE
NTPase_1
SRPRB
Herpes_ori_bp
AAA_16
AAA_23
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QMV14544
LinkDB
All DBs
Position
1:complement(2000512..2004495)
Genome browser
AA seq
1327 aa
AA seq
DB search
MSWPDSDTIRPVLIKYTIGFALTSSQPHTQPPQAQANTPGTLRHALKQCMLKDRFRLSKR
IQGASKINNPNAKQAVFDEIAQDIAKSMMAAELRQQTSAVLEYPEILPVSQKRDDIAQAI
EKHQVVIVAGETGSGKTTQLPKICAELGRGTYGVIGHTQPRRLAARSVAARIAEETKTSL
GDFVGYKVRFNDQISDQTQIKLMTDGILLAEIQHDRFLNQYDTIIIDEAHERSLNIDFIL
GYLKQLLPKRPDLKVIITSATIDPERFSQHFDSAPIIEVSGRTYPVDTRYRPLAGEDESE
RDQLDGIFEAVDELSDEGPGDILIFMNGEREIRDTADALSKRNLKHTEIVPLYARLSAGE
QNRIFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQA
SANQRKGRCGRVEAGICIRLYSEDDFQSRPEFTDPEILRTNLASVILQMTALGLGDIEAF
PFVEAPDKRNIQDGVRLLEELGAIQTQTQERKKQLTEIGQKLSRLPIDPRLARMVLEAPK
WGCLKEVMIISAALSIQDPRERPSEKQQSADEKHRRFYHEDSDFLTFVHLWDYIKQQQKA
LSSNQFRRQCKSDYLNYLRIREWQDVYFQLHQSMHDLGLKLNEEPGSYQGVHTSILVGLL
SHIGIKDQEEKEYHGARNARFHIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIQPEW
IEPLAQHLIKRSYSEPHWSKKRAAVMADEKVTLFGVPIVAKRLVNYGPIDAVLSREIFIR
SALVEGEWETKHAFFKQNRKLLQEVEELEHKSRRRDILIDDESLFQFYDQRVGTEVVSGR
HFDTWWKKTSRENPEYLHFEKEMLFKGDASHVTELDYPNFWHQNGIKLKLSYQFEPGDDS
DGVTVHIPLAVLNQIEPMGFDWQIPGLRHELVVNLIKSLPKTLRKNFVPAPNYADAFLAR
TTPMELPLLDALEKELKRMTGVTILREDWQVDQLPEHLRITFRAVDHRHRKLRENKDLFT
LKESLKDKVKETLSQVADDDIEQKGLHTWSFGELPLVYQQKKGGFDVRAYPALVDEKDSV
AIQLFETEQEQQRAMRAGERRLILLNVPSPVKYLHANLPNKSKLGLYFNPYGKVLDLIDD
CIACGIDKLIDGQGGLVWQAEAFEALKEYVRGELGDTVVDIAKQVEEILTTAYQINKKLK
GKVDFTMAFALSDIKAQIESLIFKGFATECGWKKLPDILRYMKAIERRLEKLPIDPNKDR
LHMLKIEAVTQDYRELLNKIPKGASIPENVKAIRWMIEELRVSFFAQQLGTPYPVSDKRI
KNAISEC
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
gtgtcatggcctgacagtgatacaatccggccagttttaatcaagtatacaataggattc
gctttgacgtcgtcacagccacatacccaaccccctcaggcacaggccaatactccggga
actctgcgtcatgcattgaaacaatgtatgctcaaagatcggttccgcctgagtaaacgg
attcagggggccagtaaaattaacaaccccaacgccaaacaggccgtttttgatgaaatc
gctcaggacattgccaaatcgatgatggcagccgagctcagacagcaaacctctgcggta
ttagagtacccggagattttgcctgtgagtcagaaacgagatgatattgcccaagcaatt
gaaaagcatcaggtcgtgattgtggcgggtgaaaccggctcagggaaaaccacacagttg
ccgaagatctgtgctgaattggggcgtggcacatatggggtgattggtcatacacaaccg
cgtcgattagccgcacgctctgtcgcggcccggattgctgaagaaaccaaaacttcactc
ggcgatttcgtcggttataaagtgcgttttaatgatcagatatccgatcagactcagatt
aaattgatgacggacgggatactgctggctgaaattcagcatgatcgatttctcaatcag
tacgatacgatcattatcgatgaagcccatgagcgtagtctgaatattgatttcattctc
ggctatttaaaacagttgttgccgaagcgtcctgatctgaaagtgattatcacgtcggcg
acgatcgatcctgaacgtttctcccagcactttgacagcgccccgatcattgaagtatcc
ggcagaacgtatccggttgatacccgttatcgtcccttagccggtgaagatgagagtgag
cgtgatcagctcgacggtatttttgaagctgttgatgagctgagtgatgaagggccgggt
gatatcctgatctttatgaacggggaacgtgagatcagggataccgccgatgccttgagc
aagcgcaacctcaaacatactgaaattgtgcctttgtatgcgcgtctctctgcgggtgag
cagaatcggatttttcaatcccacagcgggcggagaattgttttggcgaccaacgttgct
gaaacatcgctgacggtgccggggattaaatacgtgattgatccggggaccgcccgcatc
agtcgttatagttaccgcactaaagtccaacgtctaccgattgagcccgtttctcaggcc
agcgccaatcagcgtaaagggcgttgtggccgggttgaagccgggatttgtatccggctt
tattctgaagatgattttcaatctcgtccggagtttaccgatcccgaaattctcagaacc
aatctggcatcggtcattttgcagatgaccgccttggggctcggtgacattgaggcattc
ccctttgtggaagccccggataagcgaaatattcaagatggggttcggctgcttgaagag
ttaggcgcgattcagacgcaaactcaggaacgcaaaaaacagttgaccgagattggacaa
aagttgtcgcgtcttcctattgatccgcggctcgcccgtatggtgcttgaagcgccgaaa
tggggatgtctgaaagaagtgatgattatctcggcggctttgtcgattcaggatccccga
gagcgtccttcggagaaacagcagtcagccgatgaaaaacaccgtcgtttttaccatgaa
gactctgattttctgacctttgttcatctatgggattatatcaaacaacaacaaaaggct
ctgagtagtaatcagttcagacgtcagtgtaaaagcgattatctgaattatctgcgcatt
cgcgaatggcaggatgtctattttcaattgcatcaaagtatgcatgacttggggctgaaa
ctgaatgaggaacccggcagttatcagggagttcacacctcgattctggttggtttactg
tctcatatcgggatcaaagatcaggaagagaaagagtaccacggggcgagaaacgctcgt
tttcatattttcccggcttccggcctgtttaagaagcaaccgaaatgggtgatgtcggct
gagctggtggaaacctcgaaactttgggccagagtggtggcgaagattcaaccggagtgg
attgagccgctggcacaacacttgatcaaacggagctatagtgagccgcattggtcgaaa
aagcgcgcagcggtgatggctgatgagaaagtgaccttgtttggtgtaccgattgttgcc
aaacgtctggtgaactacggcccgattgatgcagtcttgagccgggaaatcttcattcgg
agtgcgctggtagaaggtgagtgggagactaaacacgctttcttcaaacaaaaccgcaag
ctgttacaagaagtggaagagctggaacataaatcgagacgccgggacattctgattgat
gatgagtccttgtttcaattttatgatcagcgcgtcggtacggaagttgtctctggccgt
cactttgatacatggtggaaaaagaccagccgggagaatccggaatatctccattttgaa
aaagagatgttgttcaaaggtgatgccagccatgtgaccgaactcgattatccgaatttc
tggcatcagaatggcatcaagctgaagcttagctatcaatttgaacctggtgatgatagt
gacggtgtcacggttcatatcccgttggccgtattgaaccaaattgaaccgatggggttt
gactggcagatccccgggctgcgccatgaactcgtggtcaatttgatcaaatcgttgccg
aaaacattgcgcaagaattttgtgccggcgccgaactacgcagatgcctttttggcccgg
acgacgccgatggaactgccattattggatgcactggaaaaagagctgaaacgaatgacc
ggggtgaccattctgcgggaagactggcaagtcgatcagctcccggagcacctgcgaatc
acattcagagccgtcgatcatcgtcatagaaagctacgggaaaataaagacttattcacg
ttaaaagagagcctgaaagacaaagtcaaggagaccctgtctcaggttgccgatgatgat
atcgaacagaaaggtctgcatacctggagtttcggtgagcttcctctggtctatcagcag
aaaaaaggtggcttcgatgtcagagcctatccggctctggttgacgaaaaagacagtgtt
gccattcagttatttgagaccgagcaagagcaacaacgcgccatgcgagcaggagagcgg
cgattaattttgctcaatgtgccgtctccggtgaaatatttgcacgctaacttaccgaac
aaatcgaaactcggactctatttcaatccatacggcaaagtgttggatctgattgatgac
tgcattgcctgtgggatcgacaagcttatcgatgggcaaggcggattagtctggcaggcc
gaggcgtttgaagcgttgaaagagtacgttcgcggtgaattgggcgatacggtcgttgat
attgcaaaacaagttgaagaaattttgacgactgcgtatcaaatcaacaaaaaactgaaa
gggaaagtcgattttacgatggcatttgcactttctgatatcaaagcgcaaattgaaagc
ctgatcttcaaaggctttgccacggaatgcggttggaaaaagctcccggatatcctaagg
tatatgaaggctatcgagcgtcgattagaaaaattacccatcgatcccaacaaagatcga
ctccatatgctgaaaatagaagcggtgacgcaagattatcgggaattattgaacaaaatt
ccgaaaggtgcttcgattcccgaaaatgttaaagcgatccgctggatgattgaagagtta
agggtgagcttttttgcccaacaacttggcacgccttatcccgtttcggataagcggatc
aagaatgccatcagcgaatgttaa
DBGET
integrated database retrieval system
