Vibrio spartinae: Vspart_02202
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Entry
Vspart_02202 CDS
T07037
Symbol
pel
Name
(GenBank) Pectate trisaccharide-lyase precursor
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vsr
Vibrio spartinae
Pathway
vsr00040
Pentose and glucuronate interconversions
vsr01100
Metabolic pathways
vsr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vsr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Vspart_02202 (pel)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Vspart_02202 (pel)
Enzymes [BR:
vsr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Vspart_02202 (pel)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
TDRP
Motif
Other DBs
NCBI-ProteinID:
QMV14926
LinkDB
All DBs
Position
1:complement(2480705..2482222)
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AA seq
505 aa
AA seq
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MMIDKQFKHTIVASVISSLAWVALPSFANGFHTENGGTTGGDGGQVVRTTTGTQIHAALC
NRVSSDTPITIQVEGTINYGNTSKVSGPSCNTAADKIELKNISNVTLIGVGQGALFDELG
IHIRSSSNIIIRNVHVRNVKKSGFPTSNGGDAIGMEKDVSNVWVDHVTLEASGGESDGYD
ALVDMKNDTKYVTVSYSILRNSGRGGLVGSSDSDDNNGPVTFHHNYYENINSRTPLLRHA
TAHSYNNYYDGLISSGMNPRIGGKIKAENNYVKDSKDPLGTFYTNDMGFWDVSGNIWNNV
RWSNDGNKVHPAGPNPVSTTSIGIPYQYQPDQASCVPAIVMATAGADKGLAVSDGRCHVT
PGDDHSGNGNDNGGDQDNGGGSTSGSNLALNAGADGSSKGNGTSYGNVTDGDSSSYWSPR
GTTGTISVKRLNQTINAVRIIELSGTQGTVTSWSLVNHDDGATLASGNSIPGVISFPNTN
LDKISFVIHSASGTPAIAEFEVYKN
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgatgatcgacaaacaatttaagcatacgatagtcgcttcagtgatatcatcgctggca
tgggtcgcgttaccttcattcgcgaatggctttcatactgaaaatggcggaacaacaggc
ggagacgggggacaagtcgttcgcacaacaaccggtacgcaaattcatgcggcgttatgt
aaccgtgtttctagtgatactccgattactattcaggtcgaaggaaccattaactatggc
aatacttcaaaggtctccggcccgagttgtaacaccgctgcggataaaattgagctgaaa
aatatcagcaatgtcaccctgataggggtcggtcagggcgctctatttgatgagcttggg
attcatatccgttcttcatccaacatcatcatccgtaatgtgcatgtcagaaatgtgaag
aaatctggttttccgacgtcgaacggtggtgatgctatcgggatggagaaagatgtctca
aacgtctgggttgatcatgtcacattagaagcgagtggtggtgaaagtgatggctatgac
gctttggttgatatgaagaatgataccaagtacgtcaccgtctcttacagtattctgaga
aattctggccggggtggtctggttggttcaagtgacagcgatgataacaacgggccggtg
actttccaccataactactatgagaacattaattcacggacacccctgttacgccatgcg
acagcacattcttataacaattattatgatggcttaatttcttcagggatgaacccaaga
atcggcgggaagatcaaagcagaaaataactatgttaaagattctaaagacccgctcggt
actttctataccaatgatatgggattttgggatgtgagtggcaatatttggaataacgta
cgttggtccaatgatggtaacaaagttcatccggcagggccaaatccggtttcgaccact
tctattggtattccttatcaatatcaacccgatcaggcaagctgtgttccagcgattgtg
atggcaaccgcgggtgcggataaaggcctggctgtttctgatggtcgttgtcatgtcaca
ccgggagatgatcattctggtaatggtaacgataatggtggcgatcaggataacggcggt
ggttcaacttcaggttcaaaccttgccttaaatgcaggtgctgacggtagttctaaaggt
aacggaaccagctatggtaatgtgacagacggagatagcagttcctactggtcgccaaga
ggtacaaccggcacgatcagtgtcaaacgtctcaatcaaaccattaatgcagttcgaatc
atcgaactgtccggtactcagggcacggtcacttcttggtctttggtgaatcatgatgat
ggtgccacgctggcatcgggaaactcaattcccggtgttatctcattcccgaatacgaat
ttggataaaatcagctttgtgatccactcagccagcggcacgcctgctattgctgagttt
gaagtttacaaaaattaa
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