Vibrio spartinae: Vspart_02234
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Entry
Vspart_02234 CDS
T07037
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vsr
Vibrio spartinae
Pathway
vsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vspart_02234 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsr03019
]
Vspart_02234 (rne)
03009 Ribosome biogenesis [BR:
vsr03009
]
Vspart_02234 (rne)
Enzymes [BR:
vsr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Vspart_02234 (rne)
Messenger RNA biogenesis [BR:
vsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Vspart_02234 (rne)
Ribosome biogenesis [BR:
vsr03009
]
Prokaryotic type
rRNA processing factors
Vspart_02234 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
QMV14958
LinkDB
All DBs
Position
1:2514164..2517370
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AA seq
1068 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEVAKEYFPAGYTYQGRPSIKEVLKEGQEVIVQIEKEERGSKGAALTTFV
SLAGSYLVLMPNNPRAGGISRRIEGTERTELKEALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASDSNPAPFLIHQESNVIARAIRDYLRRDIGEILIDSSTIYERA
LEHIRLVRPDFVNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
KLRDAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTSQVLAVVPVPIASYLLNEKRRSINHIERIQDVKITIVPNSDMETP
HFEVIRVREGEEQEMLSYLVPTRIDSIRETENKDIVEPETKQRRIEEPVLKGFAAPATSA
PQPKAPQPKTPQAQDQGTQKQSEPKGPAQPGLFSRFMKGLTDLFSGSESAQPEQPKLVTE
TEKPEQEQRSENRKPRRSRERNHEQRRRPRQQTQDSDKPKLDKADSTEVKQQPSDEKKPT
KSQPRKPKQEKQDKRGNGNKDKNAATKLAEEGQKIAQDAQSEAKKDPQDTQEKAVVAKER
RQRRKLTKQIRLQSQSADETLASQERESEQDALSQEAAPVAVVNEPSSPVQSSSEEMQQN
QTSTNNDANENANTEEPKQRRSRRSPRHLRANGQRRRRGRERRPNPFRLRKGGVASPEMA
MGKVMPSYGLVKKSTPQTVKPEQSPAQPETQEQLSGVAFPEMAMGKVIIRSATESTTPEI
ATSENAPKATPESIAPETVTPETASAPEAASVVTQEAKQPSSGHNDKVTMTVETAGDKQP
SPAPVAAETIHEVTAEPAEQQVVPDDSPREMPESTQQSAELPVQLAPESVIAVKGHAFSA
MTKAPGNGELVQVLLEAAPLREQRYSLKGAGSHAATNHASSAMAKPLQ
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgcgctggtcgat
ggtcagcgacttttcgatctggatatagaaagccccggacacgaatctaaaaaagccaat
atttacaaaggaaaaatcaccagagttgagccaagtttggaagcagcatttgttgattat
ggtgctgaaagacacggtttccttcctctcaaagaagttgcgaaagaatatttcccagcc
ggatacacttatcaaggacgtcctagtattaaggaagttctgaaagagggccaggaagtt
atcgttcagatcgagaaggaagaacgcggtagtaaaggtgctgcactgacaacatttgtc
tctctggctggcagttatttggttctgatgccgaataatcctcgagccggtgggatttcc
cgtcgtatcgaaggcacagaaagaactgaactgaaagaagcactcagtacactcgaactt
ccccaaggtatgggactgattgtccgtaccgctggtgtgggcaaaagtgctgaagagtta
gaatgggatttaaatgttctgctcaatcattggggggcgattaaacaggcctccgactct
aatcctgcaccatttctgatccatcaggaaagtaatgttattgcacgtgcaattcgcgat
tatctacgtcgtgacattggcgaaatcttaatcgatagctctaccatttacgaacgtgca
ctagagcatattcgccttgtgcgtcccgattttgttaatcgggttaagaagtacgaaggt
gaagtgccgctattcagtcattatcaaatcgaaagccaaatcgaatccgcattccaacgt
gaagtccgtttaccttctggtggctcgatagtgatcgatccgacagaagcactcacttct
atcgatatcaactctgctcgtgcaactaaaggcggtgatatcgaagaaacagcgctgaat
acgaatttggaagctgctgaagaaatcgctcgtcaactccgtttacgagatttaggtggc
cttgtggtcatcgacttcatcgatatgacgccagttcgccatcagcgtgaagttgagaat
aaactccgagacgctgttcgtgtggaccgtgcccgagttcagattggtcgcatctccaga
ttcggactacttgaaatgtccagacaacgcttgagtccttctctggcagaggcaagtcac
catatttgtcctcgctgttctgggacaggggttgttcgggataacgaatctctcgcactc
tcagtgctacgattgattgaagaagaagcactgaaagataatacctcgcaggtacttgct
gtcgtcccagtgccgattgcatcttatttattgaatgagaaacgtcgatcaatcaaccat
attgagcggattcaagatgtcaagatcaccatcgtgccaaactctgatatggaaacacct
cattttgaggtcatccgggtcagagagggtgaagaacaggaaatgctgtcttacctcgta
cctacacgtatagacagcattcgtgaaaccgaaaataaagatattgtcgaacctgaaacg
aaacagcgacgtatcgaagagccggtattaaaaggatttgctgcgccagcaacatctgcg
cctcaacctaaagcgcctcaacccaaaacgcctcaggctcaagatcaaggcacacagaag
caaagtgaaccgaaagggccggcacaaccggggctgttcagtcgctttatgaaaggcctg
acggacctgttctctggttcggaatcggcccagccagaacaaccgaaactggtgaccgaa
acagaaaaaccagaacaggaacaacgttcagagaatagaaaacctcgtcgttcccgtgaa
cgcaatcatgagcaacgtagacgtccgcgtcagcaaactcaggatagcgacaagcccaaa
ctagataaagcggactcaacagaagtaaaacaacaaccttctgatgagaagaaaccgacg
aagtctcagcctcgcaaaccgaagcaagaaaagcaggataagcgcgggaatgggaataaa
gacaaaaatgctgctactaagttagcagaggaaggacaaaagattgctcaggatgcacaa
tctgaagcgaaaaaagatccacaggatacccaagaaaaagcagtggtcgctaaagagcgt
cgccaacgccgcaagctaaccaaacagattcgtctgcagtctcaatcggctgacgaaaca
ttggcaagtcaggaacgtgagtctgaacaggatgcgttgagccaagaagccgcccctgta
gcagtggtaaacgagccgtcatcccctgtgcagtcatcatcggaagagatgcaacagaat
caaacctcgactaataatgatgcgaatgaaaacgcgaataccgaagagcctaaacagcgt
cggagtcgccgctcacctcgccatttacgtgcaaatggacaacgccgtcgtagaggaaga
gagcgcagaccaaacccattccgcttacggaaaggtggtgttgcatctccggaaatggcg
atgggcaaagtgatgccaagctacggtttggtgaaaaaatccacaccgcagacggttaaa
cccgagcaatcaccagctcagccagaaacacaggaacaactcagcggtgttgcattccct
gaaatggcaatgggtaaagtgatcattcgttcagcgactgaatctacaacaccggaaatt
gccacatcagagaatgcaccgaaagccacaccagagagcatcgctcctgagacggttact
cctgaaacggcgagtgctcctgaagcggcgagtgtggtgacacaagaagcgaaacaacct
tcatcaggtcacaatgataaggtgacgatgacggtagaaacggcaggtgataaacaacca
tctcctgcgccagtcgcggcggaaaccattcatgaagttactgctgaacccgcagaacag
caagtggttccggatgacagtcctcgcgagatgccagaatcaactcagcaaagcgcagag
ttacctgtacagctcgcaccagaaagcgtcatagcagtgaaaggccatgcattttcggca
atgacaaaagctcccggaaatggtgaactggtacaggtccttctggaagcagcgcctttg
cgagagcaacgctattcattaaaaggcgctggtagtcatgctgcaaccaatcatgcaagt
tcggcaatggcaaaaccactacagtga
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