Vibrio spartinae: Vspart_02503
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Entry
Vspart_02503 CDS
T07037
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vsr
Vibrio spartinae
Pathway
vsr03030
DNA replication
vsr03430
Mismatch repair
vsr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Vspart_02503 (dnaE)
03430 Mismatch repair
Vspart_02503 (dnaE)
03440 Homologous recombination
Vspart_02503 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsr03032
]
Vspart_02503 (dnaE)
03400 DNA repair and recombination proteins [BR:
vsr03400
]
Vspart_02503 (dnaE)
Enzymes [BR:
vsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Vspart_02503 (dnaE)
DNA replication proteins [BR:
vsr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Vspart_02503 (dnaE)
DNA repair and recombination proteins [BR:
vsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Vspart_02503 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QMV15210
LinkDB
All DBs
Position
1:complement(2785058..2788537)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRIHSDYSMIDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYSTAHNC
GVKPIIGADFLVRSQAFGDDLTHLTLLAANNTGYKNLTWLISQAYLRGHIQHHPVIDQEW
LAEHSEGLIVLSGGKNGDIGQALLKGNQKLVEQYVDFYQTHFPDRFYLELTRTGRLDEET
YLHFAIELAGQYDLPVVATNEVVFLSRDLFDAHEIRVAIHDGYTLEDPRRPKHYSEQQYL
RSEDEMCELFKDIPEALGNTVEIAKRCNVTVRLGEYFLPNFPTEGMNIDDFLVKKSQEGL
EERLEFLFPDPQVRAQQRPAYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDRVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LQELYDVDEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFSPIYCDPEGHYPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKQGEPPVRIEAIPLVDPQSFRNL
QNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREP
LSYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRAIFEQGAINNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECIRMNLTVLPPDINSGLYRFNVDDQGAIVYGIGAIKG
VGEGPIDAILEARNAGGHFKDLFDFCARVDLKRVNKRVIEKLIYAGALDRLGPHRAAMMA
SLSDAVKAASQHRQAESFGQTDMFGVLTDAPEAVEQRYIQVPSWPEKVWLEGERDTLGLY
LTGHPVNAYLKELNYYTDCRLKDVTPTRRDQSLKVAGLVIAARVMTTKRGSRIGILTLDD
RSGRLEAMLFSDALEQYAELLEKDKILILSGQVSFDDFNGGLKMTVREVMDLDSSREKYA
KSLSLSITQTQIDEPFFERFSRILEPHRSGSVPIHIYYQRVDARAKLTLGTEWRVTPNDT
LLDELKQLLGPGQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccctaaatttatccatctcagaattcatagtgattattctatgattgatggg
ctgtcgaaagtgcctcctttagtcaagaaggttgcagagatgggaatgccggcgatggcg
ttaaccgatttcacaaacctatgtggtttagtgaaattttacagtacggcgcataattgt
ggcgtgaagccgattatcggtgcagattttttagtacgttcgcaagcattcggggatgat
ctgactcatctgacgttgttggcagcaaataatactggctacaagaatctgacttggctc
atctcacaagcctatcttcgtgggcatattcagcaccacccggtgatcgatcaggaatgg
ctggctgaacattcggaaggtttaatcgtcctgtctggcggtaaaaatggtgatattgga
caggctttactcaaaggcaaccagaaactggttgagcagtatgtcgatttttatcaaact
catttccccgaccgtttttatcttgaattaacccgaacagggcgtcttgacgaagaaacc
tacttgcattttgccatagaactggcaggacaatatgacttaccagttgtggcgaccaat
gaagttgtctttttaagccgggatctatttgatgcgcatgaaattcgagtggcgattcat
gatggttacacgctcgaggatcctcgcagacccaaacactatagtgagcagcaatatctt
cgtagtgaagatgaaatgtgtgagctgttcaaagacatccccgaagcactgggaaataca
gttgaaattgccaagcgctgtaatgtgacggtgcggttaggcgagtatttcttaccgaac
ttccccacggaagggatgaatattgatgactttttagtgaaaaagtcacaggaaggactc
gaagaacgactcgaatttctctttcctgatccgcaagtcagagcgcaacagcgtcctgcc
tatgatgagcgtttgcagattgaacttgatgtcatcaaccaaatgggctttcccggttat
ttcttgatcgtcatggagtttatccaatggtctaaagataatgatattccggtgggaccc
ggtcgggggtctggtgccggttctttggtggcctatgccctgaaaattaccgatctggat
ccgttggaatacgatctgcttttcgaacgttttcttaatccggaacgggtctcaatgccc
gactttgatgttgatttctgtatggataagcgtgaccgggtgatcgaacacgtcgctgag
atgtacggaagagatgccgtttctcagatcattactttcggtaccatggcagcaaaagcc
gtgattcgtgatgtgggacgggtcttggggcatccatttggattcgtcgatcgtatttcc
aaactggtgccgcccgatccggggatgactctggaaaaagcgtttaaagctgagccagcg
ctgcaagaactctatgatgttgatgaagaagtcaaagagctgatcgacaagtgtcgcatt
ctggagggatgtacccgaaatgcgggtaaacatgcgggtggggtggtgatttcaccgacg
acgattaccgatttttcccccatctattgtgatccggaaggtcactacccggtcactcag
ttcgataaaaatgatgtcgagactgcgggactggtgaagtttgactttttggggctgcgt
acactgacgattatcgactgggcgcttggtctgatcaatccacgattagaaaagcaagga
gaaccaccggttcgtatcgaagcgattccgcttgttgacccacaatcatttcggaacttg
caaaactcagaaacaaccgcggtgttccagctcgaatcgcgcgggatgaaagatctgatt
aaacgacttcagccggacagtttcgaagatattattgcattggtggcgttgttccgtccc
ggtcctttgcagtcagggatggtcgataactttatcgaccggaagcatgggcgcgaaccg
ctctcttatcctgatgaaaaatggcaacacgaatcgctcaaagagattcttgagccaacg
tatggcattattctttatcaggaacaggtcatgcaaatcgctcaggttttggctggctac
actttgggtggtgcagatatgttgcgccgcgcaatggggaaaaagaagcctgaggaaatg
gcgaagcagcgggcgatcttcgagcaaggtgcgatcaataacggtattgatggcgaactt
gcaatgaaaatttttgacttggtagagaaatttgccggttatgggtttaacaagtcgcat
tcggcagcgtatgctctcgtatcatatcagacgttatggttgaaaacgcactatccagcg
gagtttatggccgcggtgatgactgcggatatggacaataccgaaaaagtggtcggtctg
gtcgatgagtgtatccgcatgaacctgactgtgctaccgcctgatattaattcaggcctt
tatcggtttaatgtcgatgatcagggcgctatcgtgtacggcatcggggcgataaaaggg
gtcggtgaaggtccgattgatgctattctcgaagcccgtaatgctggcgggcattttaaa
gatttatttgatttttgtgcgcgtgttgatcttaaacgggtgaataagcgtgttattgag
aaactaatctatgccggtgcgctcgatcgtcttggaccacatcgcgcagcaatgatggct
tctctgagtgatgcggtcaaagcggccagccaacatcgtcaggctgaatcatttggtcaa
acggatatgtttggtgtattaaccgatgcgccggaagcggtagaacaacggtatatccaa
gtgccgtcatggccggaaaaggtttggcttgaaggcgaaagagatacgctggggctttat
ttaaccgggcaccctgtgaatgcgtatctgaaggaactcaattattatactgattgtcga
ttaaaggatgtgacgccaacacgacgcgaccaatcattaaaagtggcgggcttggtgatt
gccgcacgggtgatgacgacgaagcgaggctcacgaattgggatattaacattggatgat
cgttctggtcggttagaagccatgttgttctccgatgcgctggaacaatatgcagagttg
ctggaaaaagataaaattctgatcttaagcggacaggtcagctttgatgatttcaatggt
gggcttaaaatgaccgtccgcgaagtgatggatttagattcatcacgagaaaaatatgca
aagagtttgtctttatcaatcactcaaacacagattgatgaaccattttttgagcgtttc
agccgtattctggaacctcaccgttccggcagtgtaccaatacatatttattatcaacgg
gttgatgccagagcgaaattgaccttgggtacagaatggcgagtgacgccgaacgataca
ttgctggatgaactgaaacaattgcttggccccggccaagttgaactcgaatttaactaa
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