Vibrio spartinae: Vspart_03099
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Entry
Vspart_03099 CDS
T07037
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vsr
Vibrio spartinae
Pathway
vsr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vsr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Vspart_03099 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsr03021
]
Vspart_03099 (rpoC)
03400 DNA repair and recombination proteins [BR:
vsr03400
]
Vspart_03099 (rpoC)
Enzymes [BR:
vsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Vspart_03099 (rpoC)
Transcription machinery [BR:
vsr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Vspart_03099 (rpoC)
DNA repair and recombination proteins [BR:
vsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Vspart_03099 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QMV15748
LinkDB
All DBs
Position
1:complement(3435157..3439359)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLEKSQLLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDMHHETEVMREELNTTNSETKRKKVTKRLKLVEAFLSSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEPVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKVNAPGEGMYLAGPKEAEKAYRTK
SAALHARVKVRITETIRDEDGHETTETKMVDTTIGRAMLWQIVPRGLPYSLVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPPAKYTEISEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVINRQGDEEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEYDCGTQEGVEMMPHIEGGDVKVALTELAL
GRVVAEDILKPGTEEILIPRNTLIDEKLCQILDENSVDQLRVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGESVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNKGSVKL
NNAKFVTNKNGKLVITSRATELTIIDEFGRTKEKHKLPYGSLLSKADGDLVDTGEVVANW
EAHTMPIITEVSGRVQYVDMIDGVTVSRQMDDLTGLSSSEVTEAAARPSAGKDMRPAIKL
VDEQGRDVMIPGTDMPAQYFLPGKAIVNLEDGAEVGVGDTLARIPQKSGGNRDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLIITRESGDNYEEMVPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGIHAVTQYIANEVQDVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLAGEQVEYSQVKIANRELVAEGKEPARYERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERHARREAQKEGPS
AEQATDNLAALLNAGFSSDD
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctgaaagcacagcacaagaccgaagaatttgatgcaatc
aaaatcggtctttcttcacctgatatgatccgttcatggtcatttggtgaagtgaaaaaa
cctgaaactatcaactaccggacgttcaaaccggagcgtgacggtttgttttgtgcgcgt
atttttggtccggtaaaagactatgagtgtctttgcggaaagtacaagcgtttgaaacac
cgtggtgtgatttgtgaaaaatgtggtgttgaagtcacgcagactaaagttcgccgtgac
cgcatgggacacattgaactggcgtctccagttgctcacatctggtttctgaaatcgctt
ccgtctcgtatcggcctgttaatggatatgccgctgcgtgatatcgagcgtgtactttat
tttgaaatgtatgtcgttaccgaacccggtatgaccgatctggaaaaaagtcagttgctg
actgaagaagaatatctggatcggctggaagaatggggcgacgaatttacagcgaaaatg
ggcgctgaagccattaaggacctgttaggttcaatggatatgcaccatgaaactgaagtc
atgcgtgaagagttaaatacaacaaactctgaaacaaagcgtaaaaaagtgactaaacgt
ttgaagctggttgaagcctttctctcttcaggaaacaaccctgagtggatgattctgact
gtgcttcccgttttgccaccggatttacgtcctttggtgcctttggatggcggtcgtttt
gcgacctctgatctaaatgatttatatcgtcgcgtgattaaccgtaacaaccgtttgaag
cgtctgcttgagcttgctgctccggatattattgtccgtaacgaaaaacggatgctacag
gaatcagttgatgcattgctagataacggacgtcgtggacgtgcgattactggctcgaac
aagcgtccactgaaatcacttgcggatatgatcaaaggtaagcaaggtcgtttccgtcaa
aacctgctgggtaaacgtgttgactactcgggtcgttctgttatcaccgttggtccatac
ctgcgtttgcatcagtgtggtctgccgaagaaaatggctttggaactgtttaaaccattt
atctacagcaagttagaaacgcgtggtctggcgacaacgatcaaagctgcgaagaaaatg
gttgagcgtgaagagccagtcgtatgggatattctggatgaagtcattcgtgaacaccct
gtacttctgaaccgtgcgccaacactacaccgtttggggattcaggcttttgaacctgtt
ttgatcgaagggaaagcgattcagctacacccacttgtgtgtgcggcttataatgcggac
ttcgatggcgaccaaatggcggttcacgtaccattgacactcgaagcacagcttgaagcg
cgtacgctgatgatgtcaaccaacaacattctgtcgccagcatctggtgatccaatcatc
gtaccgtcacaggacgttgttttgggtctctactatatgacgcgtgataaggttaatgca
ccgggtgagggaatgtaccttgccggtcctaaggaagcagagaaagcatatcgcactaag
tctgctgcgctccatgcacgtgttaaagtccgcatcacagaaactatccgtgatgaggat
ggccatgaaacgacagaaacgaaaatggttgatacgaccatcggtcgtgcaatgttgtgg
caaattgtgccgagaggtctgccatatagcctggtcaaccaaaagctgggtaagaagcag
atttctaatctgttaaacgaggcttatcgtaaactgggtctgaaagacaccgtaatcttc
gctgaccagattatgtatacaggttttgcttatgcggcactgtctggcgtttctgtcggt
atcgacgatatggttgtaccgccagcgaaatatacagagatttctgaagcagaagaagaa
gttcgcgaaattcaggagcaattccaatctggtcttgtgactgctggtgaacgttataac
aaggtgatcgatatctgggcttcaaccaacgatcgtgttgctaaagccatgatggaaaat
ctgtcttctgaaacggttatcaaccgtcagggtgatgaagagaagcaagagtcattcaat
agtatctatatgatggctgactccggagcccggggttctgcagctcagattcgtcagttg
gccggtatgcgtggtctgatggctcgtccagatggttcgatcatcgaaacaccgatcacc
gcgaactttaaagaaggtctgaacgttcttcagtactttatttcaacgcacggtgctcgt
aagggtctggcggatacggcactgaaaactgcgaactcaggttacctgactcgtcgtctg
gttgatgtggcacaagatgttgttatcaccgaatatgactgtggtacgcaggaaggtgtc
gaaatgatgccgcatatcgaaggtggggatgttaaagttgctttgactgaacttgctttg
ggtcgtgtggttgcagaagatattctcaagccagggactgaagaaattctgattcctcgt
aacacattgatcgacgagaaattgtgtcagatcctcgatgaaaactcagttgatcaattg
agagttcgttcggttgtgacatgtgattctgacttcggctgttgtgctcaatgttatggt
cgtgatctggcgcgtggtcatctggtgaaccaaggtgaatctgtaggggttatcgcagca
caatctatcggtgaaccgggtactcagttaacgatgcgtacgttccacatcggtggtgca
gcatcgacagccgcagcagagaacagtattcaagcgaagaacaaaggttctgtgaaactg
aataatgcgaaattcgtaaccaataaaaacggtaagcttgtcattacctctcgtgcaact
gaactgacgattatcgatgagttcggtcggacgaaagagaaacacaaattgccttacggt
tccttgttgagcaaagctgacggtgacttagttgacactggcgaagttgttgcgaactgg
gaagcgcacaccatgccaatcattactgaagtatcaggtcgtgttcaatatgttgacatg
attgatggcgtgacggtttctcgtcaaatggatgacttaacaggtctgtcttcaagtgaa
gtcacagaagctgctgctcgtccttctgccggtaaagatatgcgtccagcaatcaaactg
gttgatgagcaaggccgtgatgtgatgattcctggtaccgatatgccagctcagtacttc
ctaccgggtaaagcgattgtgaacctggaagatggtgcggaagttggtgttggtgatacg
ttggctcggattcctcagaaatctggcggtaaccgggatattaccggtggtctgcctcgc
gttgcggatctgtttgaagcacgtaaaccaaaagaacctgcgattctggctgagcacaca
ggtactgtgtcattcggtaaagaaacgaaaggcaagcgccgtttgattatcacgcgtgaa
agtggtgataattatgaggaaatggttcctaagcatcgtcagttaaacgtgtttgaaggt
gagaaagtcgagcgcggtgacgtgattgccgatggtccagagtctccgcacgatatcttg
cgtctgcgtggtatccatgcagttacacagtacattgcgaatgaagttcaggatgtttat
cgcttgcaaggcgttaagattaatgacaagcacattgagacgattgttcgtcagatgtta
cgtaagtgtaccattacctttgctggcgactctgagttcctagcaggtgagcaggtagaa
tattctcaggtgaaaattgccaaccgcgaattggttgctgaaggcaaagaacctgcacgt
tatgaacgtgaactgttaggtattactaaagcatctttggcaaccgaatcattcatctct
gctgcatcgttccaagaaacgactcgcgtactgacagaagccgcggtttctggtaagcgt
gatgacttacgtggtctgaaagagaacgttatcgttggtcgattgattcctgctggtact
ggttttgcctaccatcaagaacgtcatgcacgacgtgaagcgcagaaagaaggtccatct
gctgaacaggcaacggacaacttggctgcattgttgaatgctggtttttcgtctgatgat
taa
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integrated database retrieval system
