Vibrio spartinae: Vspart_03123
Help
Entry
Vspart_03123 CDS
T07037
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vsr
Vibrio spartinae
Pathway
vsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vspart_03123 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsr03019
]
Vspart_03123 (rhlB)
Enzymes [BR:
vsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Vspart_03123 (rhlB)
Messenger RNA biogenesis [BR:
vsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Vspart_03123 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
CMS1
DUF7533
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QMV15768
LinkDB
All DBs
Position
1:3459997..3461319
Genome browser
AA seq
440 aa
AA seq
DB search
MKKTHITEQKFADLGLAPQVTAGLEQKGFAYCTPIQALALPVVLSGHDIAGQAQTGTGKT
LAFLAATFNHLLTTPAQEEREPTQPRAIIMAPTRELAIQIFNDAEPLVQSTGLKVALAYG
GESYDKQQSKLQQGVDILIGTTGRIIDFYKQKVFNLNHIQVVVLDEADRMFDLGFIKDIR
FLFRRMPPPKNRLNMLFSATLSYRVQELAFEHMNSPEHVVVEPSQKTGHRIKEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHKCERVWGHLAADGHRVGLLTGDVPQKKRERILE
QFTQGQLDILVATDVAARGLHIPQVTHVFNYDLPDDSEDYVHRIGRTGRAGESGHSISFA
CEEYAINVPGIETYIEHSIPVSDYDSSALLTDLPSPLKLASSKTSRRTNTGGSRSGRQNG
RGNNPSRKRPRQNNHQNKNS
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaaattcgccgacttgggtttagcccctcaagtc
accgcaggtttggaacaaaaagggttcgcttattgcaccccaatccaagccttggcgctg
ccggtagtgctctccggccatgacattgcaggccaggcccaaacagggactggtaaaacg
cttgcgtttcttgctgcaacctttaatcatctgctaacaacacctgctcaagaagagcgg
gagccaacacagccacgagcaattattatggcaccaactcgtgagttagcgatacaaatt
tttaacgatgcagaaccactcgttcaaagtaccggcttaaaagtcgcactggcttatggt
ggtgaaagttacgataaacagcagtccaagttacaacaaggtgttgatattcttatcgga
accaccggtcggattatcgatttctacaaacaaaaagtgttcaatctgaaccatattcag
gtggtcgttctcgatgaagcagaccgaatgtttgatctcggttttatcaaggatattcgt
tttctgttccgccgaatgccgccaccgaagaaccgactgaacatgttattctccgccacc
ctatcttatcgggttcaggaattagcatttgagcacatgaacagtccggagcatgttgtc
gtcgaaccgtcgcaaaaaaccggacatcgaattaaagaagaactgttttacccctcgaat
gagcacaaaatggctttgttacaaaccctcattgaagaagagtggccggacagagcaatc
atttttgccaataccaaacataagtgtgaacgagtctggggacatctggctgccgatggg
catcgcgtcggactactgaccggtgatgtgccgcagaaaaaacgggaacgcattctagag
caatttacgcagggccagttggatattttagtcgcgaccgacgttgctgcgcgaggacta
catatccctcaggtaactcacgtctttaactacgatttaccagacgacagtgaagattat
gtacaccggattggccggacgggcagagccggagaaagtggtcattcgattagcttcgcc
tgcgaagaatacgcgatcaatgtaccgggaatagaaacatatatcgaacattcaattccg
gtttctgattatgattcatcggcactattaactgatttacccagtccgttaaaacttgct
tcatcaaaaacatcaagaagaaccaatactggtggttcacggtctggacgtcagaatgga
cgaggtaataatccatccagaaaacggccgcgacaaaacaaccaccagaataaaaatagc
tga
DBGET
integrated database retrieval system
