Vibrio spartinae: Vspart_03894
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Entry
Vspart_03894 CDS
T07037
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vsr
Vibrio spartinae
Brite
KEGG Orthology (KO) [BR:
vsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsr03016
]
Vspart_03894 (rnb)
Enzymes [BR:
vsr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Vspart_03894 (rnb)
Transfer RNA biogenesis [BR:
vsr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Vspart_03894 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QMV16500
LinkDB
All DBs
Position
2:complement(501508..503505)
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AA seq
665 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGTIKATDKGFGFLEIDSKNSVFIPPPYMKKSMHGDKV
IAIIRTENEREVAEPQELLEPALSRFIGRVKLHKGKLNVAPDHPQLKKQPLKAKVRKGLD
PNTIAENDWVVAQLTRHPLKGDNGFFVEITHKITDADDKIAPWWVTLAANDLPNQEPEGI
EHWEQKDDPALTRVDLTDIPFVTIDGASTQDMDDALYAKRTESGDFELTIAIADPTAYIT
PDDQMDKVARERGFTIYLPGRNIPMLPRELADNLCSLREGEIRPALCCTVTVAQDGTLQD
DIRFFSAQIQSHARLVYDHVSDWLELGQSSDWTPSDEIAQVVRELYAFSQARASWRATHA
VVFPDRPDYRFELSEDNDVIAIHADMRRSANRLVEEAMVTANVCAGKVLQQQFGTGVFNV
HDGFKTERIADVIALITEHGMSDHNDETVKTLTGFSALRRWLATQNTSYLDNRIRKFQSY
SEISNQPAPHFAMGLDVYATWTSPIRKYGDMINHRLLKSYIVGKPPVQLPDERVGEELAI
HRKHHKIAERNISDWLYARTLAEEPQKQTHYHAEIFDINRAGMRIRLIDNGATAFVPASL
IMDNKERIECHAEQGYIYIDKALVYKLGDTLEVTLNEVNQENRNIIAKPTAVFAEPAQSD
ESETA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaatccattacttgcccagttaaaacaacagattcaggagaatctgccg
aaaaaagaagggaccattaaagcaactgataaaggtttcggctttttagaaatcgacagt
aaaaacagtgtctttatcccacctccctacatgaaaaaatcaatgcatggcgataaagtc
attgcaatcatccgcaccgaaaacgaacgtgaagttgccgaaccacaagagttactcgaa
cctgccctctctcgctttattggccgtgtcaaactgcacaaaggcaagctcaatgttgca
ccggatcatccacaactgaaaaaacaaccgctgaaagcgaaagtcagaaaaggattggat
ccaaacacgattgcggaaaacgactgggtggtagcacagctcacgcgtcatccactcaaa
ggtgacaatggttttttcgttgaaattactcataaaattaccgatgccgacgacaaaatt
gccccttggtgggtcactctggcagcaaacgatttaccgaatcaagagccggaagggatc
gagcactgggaacagaaagatgacccggcactgactcgggttgatttaaccgatattcca
tttgtgacaattgatggtgcatcgactcaagatatggacgatgcactgtacgccaagcgt
actgagtccggtgattttgagttaacgattgccattgcggatccaaccgcttacatcacg
cctgatgatcagatggacaaggtagcccgtgaacgtggctttacgatttatctgccggga
cgcaatattccaatgctcccgagagaactcgctgacaacttatgttcgctgcgggaaggt
gaaatacgcccagccttgtgctgtacagtcacagtggctcaggatggtaccctgcaagat
gatatccgctttttctcagcacaaattcaatctcatgcccgcctggtgtacgatcatgtt
tcagactggctggaactcggtcagtcaagcgattggacaccttccgatgaaattgctcag
gtcgtccgagagttatatgccttttctcaggcgcgtgcctcatggcgggcaacccacgcg
gtggtgttccccgacagaccggattaccgctttgaactcagtgaagataatgatgttatt
gccattcatgccgatatgcgccgcagtgccaatcgtctggttgaagaagcgatggtgaca
gcgaacgtatgtgccggtaaagtgcttcagcagcaattcgggacgggggtcttcaatgtc
cacgacgggtttaaaactgaacggattgctgatgtgattgcgcttattaccgaacacggc
atgagtgatcacaacgatgaaacggttaaaacactgacaggtttttccgccctacgtcgt
tggcttgccactcaaaacaccagttatttggataaccgtattcgtaaattccaaagctat
agtgaaatcagtaatcagccagcaccacattttgctatggggttggatgtctatgcgaca
tggacatctccgattcgtaaatatggcgatatgatcaatcaccgcttactgaagtcttat
attgtcggtaaaccgccggtgcaattaccggatgaacgggttggtgaggagctggcaatt
catcggaaacatcataagattgcagaaagaaacatcagtgactggctttatgcccgaacc
ttggctgaagagccgcagaagcaaacgcactaccatgcggaaatctttgatatcaaccgt
gccgggatgcggatcagattaatcgacaatggtgccacggcatttgtccctgcttcgctg
atcatggataacaaagaacgtatcgagtgccatgcagaacaaggttatatctacatcgat
aaagcactggtgtataaactgggagatacccttgaagtcacactgaatgaagtgaatcaa
gaaaaccggaacatcattgccaaaccgactgcagtttttgctgagccagctcaaagcgac
gaatcagaaacggcttga
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