KEGG   Vibrio spartinae: Vspart_03895
Entry
Vspart_03895      CDS       T07037                                 
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
vsr  Vibrio spartinae
Pathway
vsr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vsr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Vspart_03895 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vsr03019]
    Vspart_03895 (deaD)
   03009 Ribosome biogenesis [BR:vsr03009]
    Vspart_03895 (deaD)
Enzymes [BR:vsr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Vspart_03895 (deaD)
Messenger RNA biogenesis [BR:vsr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Vspart_03895 (deaD)
Ribosome biogenesis [BR:vsr03009]
 Prokaryotic type
  rRNA helicases
   Vspart_03895 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 Cas3-like_C_2 WYL
Other DBs
NCBI-ProteinID: QMV16501
LinkDB
Position
2:504134..505972
AA seq 612 aa
MQENVIQFKELALKNEILSALDNMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAF
SLPLLNKLIMDQRKPQAIVMAPTRELAIQVAAEIKTLGQQIAGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQSPET
AQRVLFSATMPPMVKNIVDRYLRNPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMVRIL
ETEETDASIVFVRTRQDTERLADWLSSRGFKATALHGDIPQSLRERTVEHIKKGVTDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSSMEEIQLPHRDKVAQARLVQLSQELETEKEHKALEKFSELIESLRDSLDIDTTT
LAAMLLKRQQGKRPLFYVGDDPMIAEIEREKSRRRDRRDGGDDSRRSYGQGNQDWDTYQL
QVGREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKSMSSDVTRKLRKLRIR
QKDVGAVVCDFDDFRESRGRREGSRPNRSGEGRGSRDNSRREGERRFDRNRGGDHRGAHR
GERGHTRRHTEA
NT seq 1839 nt   +upstreamnt  +downstreamnt
atgcaagaaaatgtaattcaattcaaagaattagcgctcaaaaacgaaatcctctctgct
ctagacaatatgggcttcgtttctcctacacctattcaggctgctgcaattccatttttg
ttggaaggccgtgatgctttaggtaaagcacaaaccggtaccggaaaaaccgcagcattc
tctctacctctgctcaacaaactgattatggatcagcgtaagcctcaggccattgtcatg
gcaccgacgcgtgagctggcaattcaggttgctgcagaaatcaaaactttaggccaacaa
attgcaggcctgaaagtattagaaatttatggtggtgcatcgattgttgatcagatgcgt
gcccttaaatcgggagctcatatcgttgtgggtacaccgggacgggttaaagatttaatt
acccgtgatcgtctccatttggatgagtgtcacacctttattctcgatgaagctgatgaa
atgctgaaaatgggttttgtcgatgatgtgacctggattatggaacaatctcctgaaact
gctcagcgtgttttgttctcagctacaatgccgccaatggtcaaaaacattgtagaccgt
tatctgcgtaatccggcccgcgtggatgtggcaggttcaaaccagaccgttgctaaagta
gaacagcaatactgggttgtgaaaggcgttgaaaaagatgaagccatggttcgtatactt
gagacggaagaaacggatgcatccattgttttcgtgcgtacccgtcaagacaccgagcgt
ctggctgactggctttcttctcgcggatttaaagcgacagcgctgcatggtgatattcct
cagtctttacgtgaaagaacggttgagcacatcaaaaaaggtgtcactgacattctggtt
gcaacggatgttgttgctcgtggactggatgtgcctcgaattacgcacgtattcaactac
gatatcccatttgacgtcgaatcttatattcaccgtattggtcgtactggccgtgccgga
cggaaaggaaaagcgatcctgttggttcgtacaaaccaaatccgcatgttgcgtacgatc
gaacgagtgacgcgttcttctatggaagaaattcagttaccgcatcgtgacaaagttgct
caggcacgcttggttcaactgagccaagaacttgaaactgaaaaagaacataaagcattg
gaaaaattttccgagctgattgaaagcctcagagattctttagacatcgataccacaaca
ctggcagcgatgttactgaagcgtcaacagggtaaacgtccattattctacgtgggtgac
gacccgatgattgctgagatcgagcgtgaaaaatcacgtcgtcgtgatcgtcgtgacggt
ggtgatgatagccgccggagttatggtcagggaaatcaggattgggatacttaccaacta
caagtcggtcgtgaacaaggtgtccaggttaaagatatcgtcggtgcactggcaaacgaa
ctggggcttggtaaaggctcaatcggggccattaaactggcacaaggccatacattcgtt
caattgccgaaaagcatgtcttctgacgtgacccgtaagctgcgtaaacttcggattcgt
cagaaagatgtcggagctgtcgtgtgtgactttgatgacttccgtgaatctcgcggccgt
cgtgaaggtagtcgtccaaaccgtagtggtgaaggtcgtggctcccgcgataatagtcgt
cgtgaaggcgaacgccgttttgatcgtaatcgtggtggggatcatcgaggtgctcatcgt
ggtgaacgcggtcatacccgacgtcacactgaagcataa

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