Virgibacillus salarius: PD280_09465
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Entry
PD280_09465 CDS
T10331
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vss Virgibacillus salarius
Pathway
vss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PD280_09465 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vss03021
]
PD280_09465 (rho)
03019 Messenger RNA biogenesis [BR:
vss03019
]
PD280_09465 (rho)
Transcription machinery [BR:
vss03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PD280_09465 (rho)
Messenger RNA biogenesis [BR:
vss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PD280_09465 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_22
Spore_III_AA
AAA
ATPase_2
Mor
NACHT
Motif
Other DBs
NCBI-ProteinID:
WBX81861
LinkDB
All DBs
Position
1817587..1818867
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AA seq
426 aa
AA seq
DB search
MAGLTISHLETLTLKEIYALAREYKVSYYAKLTKKELIFAILKGQAEKDGYLFMDGILEI
IPSEGFGFLRPINYSPSAEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVDA
VNGDDPETAKERVHFPALTALYPDRLMKLETETNKLSTRIIDLMTPVGYGQRGLIVAPPK
AGKTMLLKEIANSISENHPDAKLIILLVDERPEEVTDIERSVHPDVDVVSSTFDEVPESH
IKVSELVLERAMRLVEHKRDVIVLMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKR
FFGAARNIEEGGSFTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRNLAQRRIFPAID
ILRSGTRKEELLVEKAHLDKMWAIRKTMQDSNDFLERFLRRLKSSKNNEEFFQLMDEEMK
RRGTKR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcaggattaactatctcccatctggagacgttaacattgaaagaaatttatgcatta
gcaagggagtataaagtctcttattatgcaaagttaacgaaaaaagaacttatttttgca
attttaaaaggacaggctgaaaaagatgggtatctatttatggatgggattttagagatt
attccatcagaaggattcggcttcttaagacctattaattattccccgagtgcagaggat
atttatatatctgcatcgcaaattcgtcgctttgatttacgaaatggggataaagtatct
ggtaaagttcgtccacctaaagaaaatgaaagatattacgggttattacatgtagatgcg
gtaaatggtgatgatcctgaaacagcgaaggaaagagttcacttcccagctctaacggca
ttgtatccagatcgtctaatgaaacttgagacagaaacaaataaattgtctacgcgtatc
attgatttaatgacaccggtaggttatggtcaacgaggtttaattgttgcaccccctaaa
gctggtaaaacaatgcttctaaaagagatcgcaaacagtatttctgaaaaccatccagat
gcaaagcttattattctacttgttgatgaacgtccagaggaagtaactgatattgaaaga
tctgtacatcctgatgttgatgtagtaagttctacatttgatgaagtaccagagagtcat
attaaagtttcagaattagtgctggaaagagcaatgcgtttagtggagcataaacgtgat
gttattgtgctaatggatagtattacgcggctggcgcgagcatacaatctggttatccct
ccaagcgggcgtacactttctggtggtattgatcctgcggcatttcaccgtccaaaacga
ttctttggagcagcgagaaatattgaagaaggcggaagctttacaattcttgctacagca
ttagttgatacaggatcacggatggatgatgtaatttatgaagagttcaagggcacaggt
aacatggaattacatttagatcgtaaccttgcccaacgtagaatctttcctgcaattgat
attctacgttcaggtacaagaaaagaagaattacttgtagaaaaagcccatctagataaa
atgtgggcaatccgtaaaacaatgcaagattcaaatgacttcctcgaacgtttcctaagg
cggcttaaatcttcaaaaaataatgaagaatttttccaattaatggacgaagaaatgaaa
cgccgtggcactaagaggtaa
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