Virgibacillus salarius: PD280_14740
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Entry
PD280_14740 CDS
T10331
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vss Virgibacillus salarius
Pathway
vss03410
Base excision repair
vss03430
Mismatch repair
vss03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PD280_14740 (recJ)
03430 Mismatch repair
PD280_14740 (recJ)
03440 Homologous recombination
PD280_14740 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vss03400
]
PD280_14740 (recJ)
DNA repair and recombination proteins [BR:
vss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PD280_14740 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PD280_14740 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PD280_14740 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
p55_CTD
Csm1_N
Motif
Other DBs
NCBI-ProteinID:
WBX79046
LinkDB
All DBs
Position
2944012..2946342
Genome browser
AA seq
776 aa
AA seq
DB search
MLKSKAKWNFTNIEDDAIHWMDNLHHLSPVIQELLLQRGITTEDAASKFLAPDLSDLHNP
DGLLSMDKATRRVHQAIEQQDKILVFGDYDADGVSSTTVLLKALQELGATCDFYIPNRFT
EGYGPNEQAFRQAFEEGYRLIITVDTGIAAIHEAKIAKELGIDLIITDHHEIQEELPDCY
AIIHPKCSPDYKFQELAGVGVAFKFAESLLGYFPNHLLAFAAIGTIADLVPLVNENRILA
YYGLKALTATDNYGLKALKAVCKIEGEVTEEDVGFLIGPRINAVGRLQDADMAVHLLMTE
NKQLAQEMAEEINAINQERQQIVSRIVKEAEQMVDNTDNQGVIIVAKEGWNEGVLGIVAS
KLVRKFDRPAIVLAIKPDSGVAKGSARSIPAFDLFQNCMTIKQLFSSFGGHSQAAGMTIQ
LDQLSAVQSALDELIQSKLTEEDFKQVIHVSQTITIPEISEELIHEINQLAPFGMDNPKP
VFHIKNLPTQARQIGSMKNHLKLQFKEENTVLDGIGFGMGELYDYLTPHTEINVVGELGI
NEWNGVRKPQMMIQDLSIAEWQLFDHRGKRNVNKLNFMEFEDDFLIVRNGNQQSFDDAIP
QITYQCNLEQLQEVETLFIYDLPNELTALKQLVQMTKPTNIHVCYYVEDSTYLRAFPTRE
EFKWLYALLMKQREIDLKQAISGIMQSRGWNKDKVLFMLNVFHELEFALIDNGMLRLQAK
PLKQDLQSSMIYQDRLQQAEIEKILYYSSYEELRKWFTEECMDYLGRPKEELSYGL
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaagtaaagcaaaatggaattttacaaatatagaggatgatgccatacattgg
atggacaatttacatcacttatcccctgttattcaagagcttttactacaaagaggaata
acaaccgaagatgctgcctctaaatttcttgcacctgatttatccgatttacataatcca
gatggactcttatctatggataaggcaacacgtcgtgttcatcaagcaattgaacaacaa
gataagattctagtttttggtgactatgatgctgatggtgtcagttcaacgacagtccta
ttaaaagcgttgcaggaattaggagctacatgtgacttttatattcccaatcgtttcaca
gagggttatggaccgaatgaacaagcatttcgtcaggcttttgaagaaggctaccgatta
attataacagttgatactggcattgctgcgattcatgaagcaaaaatagcaaaagaactt
ggcatcgacttgatcattacagaccatcatgagattcaagaagaactgccagattgctat
gcgattatacatccaaagtgttcacctgattataaatttcaagagttagcgggagtaggg
gtcgcgtttaagtttgcagaaagcttactaggctattttccaaaccatttattagctttt
gcggcaattggtaccattgcagatctagttccattggtgaatgaaaatcgaattcttgct
tattacgggttaaaagcattaacagctacggataactatgggttgaaagcattaaaggct
gtatgcaaaatagaaggcgaagtaactgaggaagatgtaggttttttaataggtcctaga
attaatgctgttgggcgacttcaggacgcggatatggctgtacatttgctaatgacagaa
aataaacaactagcacaggaaatggctgaggaaataaatgctattaaccaagaaagacaa
caaattgtcagtcgtattgtaaaagaagcagagcaaatggtagataacactgataatcaa
ggagttatcattgttgctaaagaaggctggaatgagggtgtattaggtattgttgcatcc
aaattagttcggaaatttgataggccagctattgttctggctataaaaccagacagtggt
gtagctaaggggtctgcaagaagtatacctgcgtttgatttgtttcaaaattgtatgacg
ataaagcagttgttttccagttttggtggtcattcacaggctgccggaatgaccattcag
cttgaccagctttctgcagtacaatctgcattagatgaactaatacagagtaagttaacg
gaagaagattttaagcaagtcattcatgtaagtcagaccattacgattccagaaatttca
gaagagctgattcatgaaattaatcaattagctccttttggtatggataatccaaaacct
gtttttcatattaaaaatcttcctactcaagcaaggcaaattggtagtatgaaaaatcat
ctaaagctacaatttaaggaagagaatacagtattagacggtattggctttggcatggga
gaactttatgattatttaacacctcatactgaaataaatgtagtaggagagttaggtata
aatgagtggaatggagttcgtaaacctcaaatgatgattcaagatttaagcatagcggaa
tggcaattgtttgatcatcgaggtaaaagaaatgtcaataagttaaattttatggaattt
gaagatgattttcttatcgtacgtaatggtaatcagcaatcattcgatgatgctattcca
caaataacctatcaatgtaatttagagcaactgcaagaagtagagacgttgtttatttat
gatttaccaaatgaacttactgcgttaaaacagttagttcaaatgacaaagcctactaat
attcatgtgtgttattatgtggaggatagtacgtatttgcgagcatttccaacaagagaa
gaatttaaatggctctatgcacttctcatgaaacagagggaaatcgatttaaaacaagca
atttcaggtatcatgcaatctagaggttggaataaagataaagttttgtttatgctaaat
gtgttccatgaattggaatttgccttaattgataatggtatgctgaggctacaagcaaag
ccattaaaacaagacttacaatcttcaatgatttatcaagatcgattacagcaggctgag
attgagaagatactttattattctagttatgaggaattgagaaagtggtttacggaagaa
tgtatggattatttgggacgtcccaaggaggaacttagttatggattataa
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