Virgibacillus salarius: PD280_15195
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Entry
PD280_15195 CDS
T10331
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vss Virgibacillus salarius
Pathway
vss02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vss00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PD280_15195 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vss03021
]
PD280_15195 (rpoD)
Transcription machinery [BR:
vss03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PD280_15195 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
WBX79116
LinkDB
All DBs
Position
3035240..3036361
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AA seq
373 aa
AA seq
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MADNKPSQTKENEPELTLEQAKDQLLEMGKKRGVLAYEEIADRLSNFVIESDQMDEFYEY
LGEQGVEVIGESEEDPNMQQIAKEEEFNLNDLSVPLGIKINDPVRMYLKEIGRVDLLSAA
EEIDLATRIEKGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF
DYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPT
PEEIGEEMELSPDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAVSPSDHAAYEL
LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR
HPSRSKRLKDFLD
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggccgataacaagccttcacaaacaaaagaaaatgaacctgaactaacattagaacaa
gctaaagatcagctgttagaaatgggtaaaaagcgcggtgtacttgcttacgaagagata
gctgatcgtctatctaattttgttatagaatcagaccaaatggatgaattttatgagtac
ctaggagaacaaggtgtcgaggtaattggagaatcggaagaagatcctaatatgcaacaa
attgcaaaagaagaagaatttaatttaaatgatctaagtgtcccgcttggtatcaaaata
aatgaccctgttcgtatgtaccttaaagaaataggtcgagttgatttattatctgcagca
gaagaaatcgatcttgctactcgtattgagaaaggtgatgaggaggctaagcgaagactt
gctgaagcaaaccttcgactagtcgtaagtattgcgaaacggtatgtaggaagaggaatg
ctatttctcgatctaatccaagaaggtaacatgggattaattaaagcagtcgaaaaattt
gattaccgaaaaggttttaaatttagtacgtatgctacttggtggattcgtcaagcaata
actcgtgcaattgcggatcaagcaagaacaattcgaataccagttcatatggtagagaca
attaataaattgattcgcgtacaaagacaattgcttcaagatttaggtagagagcccaca
ccagaagaaattggagaagaaatggagctttctcctgacaaggtacgtgatatattaaaa
atcgcgcaagagcctgtttcgttggaaacacctataggtgaagaagatgattcccattta
ggggatttcattgaagaccaagaggctgtctctccttcagatcatgctgcatatgaactt
ttaaaggaacaattagaggatgttttagatacactgacagatcgtgaagaaaatgtgcta
cgtttgcgcttcggtctagatgatgggcgaacaagaaccttagaagaagttggaaaagtg
tttggtgtgacacgggaaagaattcgtcaaatagaagctaaggcacttcgtaagttaaga
catccgagtagaagcaaacgattaaaggactttcttgattaa
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