Vitreoscilla stercoraria: LVJ81_04055
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Entry
LVJ81_04055 CDS
T08153
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vst
Vitreoscilla stercoraria
Pathway
vst02020
Two-component system
vst02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vst00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LVJ81_04055 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LVJ81_04055 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vst03021
]
LVJ81_04055 (rpoN)
Transcription machinery [BR:
vst03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LVJ81_04055 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_17
LINES_N
Leu_Phe_trans
Motif
Other DBs
NCBI-ProteinID:
UOO93214
LinkDB
All DBs
Position
818935..820371
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AA seq
478 aa
AA seq
DB search
MQNQLKLKQTQQLQLNPQLQQAIKLLQMSGLELDEAVEQALLENPLLERIDHKELAQPER
EFDGDTSASNDAHGDLGDQVGIDDYWQSMQITAGVGSTGIAYDGEFQDVFAQIEDNDDFR
QFLRNQVCEHQLSREEAFRVHILIENLDEHGYLSNGLQDIVEHSPLEWLLEEEDLAQALT
HLQGFEPAGVGAFDLSESLWLQLQRLPDNAVNQLAKLIVRQYFNVLGQPSNVTKLKKYLP
VNIAEIQAAVMLIQSLNPYPSSGYAHSEPTQYVLPDIRVFKQGRLWVAQLQRETQPRVRV
NEEYASVVEACGHQDLKKQMQEAKQLIHSLEMRADTVLRVADYVVAHQQAFFSEGAMALK
PMLIKSVAEFLDLHESTISRAVNQKYLSCPQGLFELRWFFTQTATNGGEGDEDEGISNRV
IKTILEKLIGEEDKRKPLSDEKLTQKLLEHEIKIARRTVTKYRESLRIPSASERKIRL
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaccaactcaaactgaagcaaacacagcaattacaactaaaccctcagttgcaa
caagcgattaaattgttgcaaatgtcgggtttggaattggatgaggctgttgagcaagcc
ttgttagaaaatcctttattagaaagaatagatcacaaagagcttgcgcaaccagaacgt
gagtttgatggcgacacttcggccagtaatgatgcgcatggtgatttgggtgaccaagtt
gggattgatgattattggcaaagtatgcaaatcactgcgggcgtgggcagcaccggcatt
gcatacgatggtgagtttcaagacgtttttgcgcaaattgaagacaatgatgattttcgc
cagtttttacgcaatcaagtttgtgaacaccaattaagccgtgaagaggctttcagggtg
catatattgattgaaaatttggatgaacatggttatttgtcgaatggtttacaagacatt
gtggaacattcgcctttggagtggttgttagaagaagaagatttggcacaggcattgacg
cacctccaaggctttgaacctgcgggtgtcggtgcattcgatttgagtgagtctttgtgg
ctgcaattgcagcgcttgcctgataacgctgtcaatcaattggcaaaattgattgtgcgt
caatatttcaatgtcttggggcagcctagcaatgtcaccaaactgaaaaaatacctgcct
gttaatattgcagaaatacaggccgctgtgatgttgattcaaagtttgaatccttatcca
agtagtggttatgctcattctgagccgacgcaatatgttttacctgatattcgagttttt
aaacaaggacgcctgtgggtggcacaattgcagcgagaaactcagccgcgtgtgcgtgtg
aatgaagaatatgcatcggttgtcgaagcatgtggtcatcaagatttaaaaaaacaaatg
caagaagccaaacagttgatacacagtttggaaatgcgtgccgatacggtattgcgtgtg
gccgattatgtggtggcgcatcaacaggcttttttcagcgagggtgccatggctttgaag
ccgatgttgattaagtcggtggcagaatttttagatttgcatgagtccacgatttcgcgt
gcggtgaatcaaaagtatcttagttgtccacaaggcttgtttgagctgcgttggtttttc
acacaaacagccaccaatggtggtgagggtgatgaagatgaaggcattagcaatcgtgtg
attaaaaccattttggaaaaactcattggcgaagaggataagcgaaaaccactttctgat
gaaaaattaacgcaaaaattgcttgaacatgaaattaaaattgctcggcgtactgtaact
aagtaccgagaaagtttgaggattccttctgccagtgagcgcaaaatacgcttgtga
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