Vitreoscilla stercoraria: LVJ81_05340
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Entry
LVJ81_05340 CDS
T08153
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vst
Vitreoscilla stercoraria
Pathway
vst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ81_05340 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vst03019
]
LVJ81_05340 (pnp)
03016 Transfer RNA biogenesis [BR:
vst03016
]
LVJ81_05340 (pnp)
Enzymes [BR:
vst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LVJ81_05340 (pnp)
Messenger RNA biogenesis [BR:
vst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LVJ81_05340 (pnp)
Transfer RNA biogenesis [BR:
vst03016
]
Prokaryotic type
tRNA degradation factors
LVJ81_05340 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
UOO93455
UniProt:
A0ABY4EDG3
LinkDB
All DBs
Position
complement(1086199..1088313)
Genome browser
AA seq
704 aa
AA seq
DB search
MFNKFVKSFQYGDQTVTIETGEIARQATAAVKVSMGDTVVLVSVVAAKKIKEGQDFFPLT
VDYFERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIIAMVVSV
DPEIDSDIPAMIGASAALVLSGVPFSGPIGAARVGYIDGQYVTNPTKAQLTQSQLDLVVA
GTAKAVLMVESEAQELSEAIMLGAVVHGHEQLQTVITAINELADEVNPAVWEWTAPVENT
ELKTKVQEIAGAIVAEAFTIRSKQERSAKLNDAWAALEAALITEESSTLEVNEIRTLFKH
LEANVVRTQILDGQPRIDGRDTRTVRPIDIQTSVLPRTHGSSLFTRGETQALATATLGTQ
RDEQIIDALSGEYTDRFIMHYNFPPYSTGEVGRVGIPKRREIGHGRLAKRALIAVLPAQE
DFNYTMRVVSEITESNGSSSMASVCGGCLALLSAGVPLKAHVAGIAMGLILEGNKFAVLT
DILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITPEIMHIALEQAKEGRAHILGLMKD
AVEGPQEMSTHAPRLYTLKINQDKIRDVIGKGGETIRGIIKDTGTEINIDDTGTVVIAAT
TAEAGEAAKKRIEEITAEVEVGAVYEGTVLKILDNNVGAIVSVIPGKDGLVHISQIAHER
VKNVSDYLQLGQVVKVKALEVDDRGRIRLSIKALLDKPEAESAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaattcgttaaatcattccaatacggtgatcaaacggtcaccatcgaaaca
ggcgaaatcgcacgccaagccactgctgctgttaaagtgtctatgggtgatactgtcgtt
ttggtatcagtggttgcagctaaaaaaatcaaagaaggtcaagacttcttcccattgact
gtggattacttcgagcgtacttacgctgctggtaaaatccctggtggcttcttcaaacgt
gaaggcaaacagtctgaaaaagaaattttgaccagccgcttgattgaccgcccaattcgt
cctttattcccagaaggtttctacaacgacatccaaatcattgcaatggtggtgtctgta
gaccctgaaatcgattctgacatccctgcaatgattggtgcttctgctgctttggttttg
agcggcgtgcctttctcaggccctattggcgctgcgcgcgtgggttatattgacggtcaa
tacgttaccaacccaaccaaagcccaattgactcaaagccaattggatttggtcgttgct
ggtactgccaaagccgtattaatggtggaatctgaagcacaagaattgtctgaagccatt
atgttgggcgcagtagtacatggtcacgagcaattgcaaaccgtcatcactgctatcaat
gaattggctgatgaagtgaatcctgcggtttgggaatggacagctccagtagaaaatact
gagttaaaaaccaaagtccaagaaattgctggtgccattgtggctgaagcattcaccatt
cgctcgaaacaagaacgttctgccaaattgaacgatgcttgggctgcattggaagcggct
ttgatcaccgaagaaagcagcactttggaagtgaacgaaatccgcactttgttcaaacat
ttggaagcgaatgtggttcgtacccaaattttggatggtcaaccgcgtattgatggtcgt
gatacacgcaccgtacgccctatcgacattcaaaccagcgtattgccacgcacccacggt
tcgtctttgttcactcgcggcgaaacccaagctttggcaaccgctactttgggcacacaa
cgtgacgagcaaatcattgatgctttgagtggcgaatatacagaccgcttcatcatgcat
tacaacttccctccatactcaacaggtgaagtgggccgtgtcggtattccgaaacgccgc
gaaatcggtcatggccgtttggcaaaacgtgctttgattgctgtgttgccagcgcaagaa
gatttcaactataccatgcgtgtggtgtctgaaatcaccgaatctaacggttcgtcttct
atggcatctgtttgtggcggttgcttggcattgttgtcagcaggcgtaccattgaaagcg
cacgttgcgggcatcgcgatgggcttgattttggaaggcaacaagtttgcggtattgact
gacatcttgggcgacgaagaccacttgggcgacatggacttcaaagtagcaggtactgaa
aacggcgtgactgctttgcaaatggacatcaaaatccaaggcattacgcctgaaatcatg
cacatcgctttggaacaagccaaagaaggccgtgcgcacattttgggcttgatgaaagat
gcagtggaaggtcctcaagaaatgtcgacccatgcaccacgcttgtacactttgaaaatc
aatcaagacaagattcgtgatgtgattggcaaaggcggcgaaaccattcgtggcatcatc
aaagacactggtactgaaatcaacatcgacgacacaggtactgtggtgattgcagcaacc
actgctgaagcgggcgaagcggctaaaaaacgcatcgaagaaatcacggctgaggtggaa
gtgggcgcagtatacgaaggcactgtgttgaagattttggacaacaacgttggcgcgatt
gtgtctgtgattccaggcaaagatggcttggtacacatcagccaaatcgctcacgaacgt
gtgaaaaacgtgtctgattacttgcaattgggtcaagttgtgaaagttaaagctttggaa
gtagacgaccgtggtcgcatccgcttgtctatcaaagctttgttggacaaaccagaagca
gaatctgctgaataa
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