Vitreoscilla stercoraria: LVJ81_07335
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Entry
LVJ81_07335 CDS
T08153
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vst
Vitreoscilla stercoraria
Brite
KEGG Orthology (KO) [BR:
vst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vst03019
]
LVJ81_07335 (hrpA)
Enzymes [BR:
vst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LVJ81_07335 (hrpA)
Messenger RNA biogenesis [BR:
vst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LVJ81_07335 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
AAA_30
AAA_25
ABC_tran
SLFN-g3_helicase
ResIII
zf_C2H2_ZNF598
AAA_16
AAA_23
SRP54
Motif
Other DBs
NCBI-ProteinID:
UOO91482
LinkDB
All DBs
Position
1502822..1506835
Genome browser
AA seq
1337 aa
AA seq
DB search
MSFDLKQTLSRDRHFLQQACKHPEKFGGQAAVEQKYARSHERFLARLATLPKPSYTGNLP
VHDKLDDIKAAIAKHQVVIVAGETGSGKTTQLPKICLQLGRGVAGLIGHTQPRRLAARAV
AERIAEELGSEIGQAVGYKVRFNDKTRPESHIKLMTDGIMLAETQTDRYLTQYDTIIIDE
AHERSLNIDFLLGYLKNLLPRRPDLKIIITSATIDSERFAEHFAINGKKAPVIEVSGRTF
PIEMRYRPLGDDANEDEEDMTLMDGIVDAVDELCRLGDGDILVFLAGEKDIREAAEALRK
GNRRNLDVLPLFARLSAQEQHQIFHPNGQRRRVILATNIAETSLTVPGIRFVVDTGLARV
KRYSARAKVEQLHVEKISQAAARQRAGRCGRVAAGVAIRLYSEEDFNTRSEYTDPEILRS
NLAAVILRMVSLNLGDVAAFPFLQAPDQRYINDGFQVLLELGAVGENNRLTKLGEQMAKL
PVDPKIARMMLAAKRLNCMPEMLIIVSALSIQDPRERPFEAREAADKMHERFKDKESDFL
SYLYLWEFFQSTRAQKSYKQTMQILQQHFLSVPRMREWRELHQQLQQTARDLDLLPKEMV
HSDKTINIQAAPDKSHKPAYKTNKNEHAVDAKTQHKMLQHGGAEASYDQIHRALLTGLIA
QVGLKSPESHEYQGARGSRFHLFPASNLFKAKPKWVMAAELTETTKLYARDVAKINPEWI
EIEAPHLVKKHYFEPHWSKERGEVLASERVTLYGLTVLPRRLVSYGRIAPQEARELFIRG
ALVEQQANFQDAFFKHNAKLIKNIADLEHKSRKQDVLVDDEVLFDFYQQQIPETHTNGKK
THPIVDAASFHAWLKQDGDEQSLYLSRDDLMQHSASHITDAQFPKTYKTADGAFKLTYRF
EPHHILDGVTMTVPLPVLNRLDAVQLEWLVAGLIREKLQLLIKALPKQVRRVCVPVPDFI
TRFLAREPNQNEAILPQLAQFIVREFGDVRILEQIDFDAWAQTELPNHCHFNLRVIDDGG
QELGIGRDLLALQQKLGHAAAVTFSDNANEFEKEHITNWNIGKLPDSIKFARGKQQLTGF
LGLQVQSDGSIALKLFDTALAAEQAHFDGVIALMSRQLKEHIKDLNKGLASFTQVAMLLK
HLGVDALREDITRAVCQRAFIGDDDLPRDEKDFKEQIKRARSRLPAVKEALNQYLLAVAQ
EYAPLIQRLQKHPLKNVLQQQLNALIYDGFVSQTPWSQWPHLARYLKAMNLRMDKYSANM
ARDAERERDIQALTQQWQQHLDALKRNNQDINPALQQFRWHIEELRVSLFAQELKTPYPV
SVKRLQKQWSELTRVVK
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgatttgaaacaaaccctcagccgcgaccgtcattttttacagcaagcttgt
aaacaccctgaaaaatttggtggacaagccgcagtagaacaaaaatacgcacggtcgcac
gaacgctttttggcacgtctcgccactttgcctaagccaagttatacgggaaatttgccc
gtacatgacaaattggacgacatcaaagccgccattgctaagcatcaagtggtgattgtg
gcaggtgaaacgggttcaggcaaaaccacacaattgccaaaaatttgtttgcaattgggt
cgtggcgtggcaggtttgattggtcacacgcaaccgcgtcgtttggctgcgcgtgcagtg
gcagaacgcattgctgaagaattgggttcggaaattggccaagcagtcggttacaaagtg
cgttttaacgacaaaacccgtcctgaaagccacatcaaattgatgaccgacggcattatg
ctcgccgaaacccaaaccgatcgctacttgacccaatatgacactatcatcattgacgaa
gcgcacgaacgcagcctcaacattgattttttgctcggctatttgaaaaatttgttgccg
cgccgccctgatttgaaaatcatcatcacctcagccaccatcgattcagaacgctttgcc
gaacactttgccatcaacggtaaaaaagcccctgtgattgaggtttcaggccgcacattc
ccgattgaaatgcgttacaggccgctgggcgacgatgccaacgaagacgaagaagacatg
acgctgatggatggcattgtcgatgcggtggacgaattgtgccgtttgggagatggcgac
attttggtgtttttagcaggtgaaaaagacatccgcgaagcagccgaagccttgcgcaaa
ggcaatcgccgcaacttagatgtattgcctttgtttgcacgtttgtctgcgcaagagcaa
caccaaattttccatcccaacggtcaacgtcgtcgggtgattttagccaccaatatcgct
gaaacatcgctcactgtaccgggcatccgctttgtggtcgacacaggtttggcaagggtc
aaacgctattcagcgcgcgccaaagttgaacaattgcatgtggaaaaaatttctcaagcg
gccgcacgccaacgtgcaggacgctgtggacgggttgccgcaggtgtggcgatacgctta
tattctgaagaagatttcaatacccgttctgaatataccgatccggaaattctgcgctcc
aatttggcagcggtgattttgcgcatggtcagcttgaatttgggcgatgtggcagcgttt
ccatttttgcaagcgcccgatcaacgttatattaacgatggttttcaggtgttattggaa
ttgggtgcagtgggtgaaaacaaccgcttgaccaagttgggcgaacaaatggcaaaactg
cctgtcgaccccaaaatcgcacgcatgatgcttgcagccaaacgcctcaattgtatgccg
gaaatgctgattattgtgtcggctttgtcgatacaagacccacgcgaacgcccgtttgaa
gcccgtgaagcggcagataaaatgcacgaacgcttcaaagacaaagaatccgatttttta
tcgtatttgtatttgtgggaatttttccaaagcacgcgtgcacaaaaatcttacaagcaa
accatgcaaattttgcagcaacactttttgagtgtgccacgcatgcgtgaatggcgtgaa
ctgcaccaacaattacaacaaactgcccgtgatttggatttattgcccaaagaaatggtg
cacagcgataaaaccattaacattcaggccgctcctgacaaaagtcacaaacctgcttat
aaaaccaataaaaatgaacatgcagtcgacgccaaaacgcaacacaaaatgttgcaacac
ggcggcgcggaagccagttatgaccaaatccaccgtgctttgctcacaggtttgattgcg
caagtgggtttgaaatcgcctgaaagccacgagtatcaaggcgcgcgtggcagccgtttt
catttgttcccagcctccaatttgttcaaagccaaaccaaaatgggtgatggcggcggaa
ttgaccgaaacgactaagctgtatgcgcgtgatgtggcgaaaatcaatccagaatggatc
gaaatcgaagcgccacatttggtcaaaaaacactattttgagcctcattggtccaaagag
cgtggcgaagtgttggcttccgaacgggtgactttgtacggtttgactgttttgccacgc
cgtttggtcagctatggccgcatcgcaccacaagaagcacgcgaattgttcatacgcggc
gcattggtagaacagcaagcgaattttcaggacgcttttttcaaacacaatgccaaactc
atcaaaaacattgccgatttggaacacaaatcgcgcaagcaagatgtgttggttgacgat
gaagtattgtttgatttttaccaacagcaaattcccgaaacgcataccaatggtaaaaaa
acgcatccgattgttgatgctgcctctttccatgcttggctcaaacaagatggcgacgag
caaagtttgtatttgagtcgcgatgatttgatgcagcattctgcttctcacattaccgat
gcgcaatttcccaaaacctacaaaactgcggacggcgcattcaaattgacttatcgcttt
gagccgcaccatattttggacggcgtgaccatgacggtacctttgcctgtactcaatcgt
ttggatgcggtgcaattggaatggttggttgcaggtttgatacgtgaaaaactgcaattg
ttgattaaggctttgcccaaacaagtgcgtcgcgtgtgcgtgcctgtgcctgattttatc
acccgttttttggcgcgtgaaccgaatcaaaacgaagcgattttgccgcaattggcacaa
ttcattgtgcgtgaatttggcgatgtgcgcattttagagcagattgatttcgatgcttgg
gcgcaaacagaattgccaaatcactgtcatttcaaccttcgtgtgattgacgatggcggg
caagaattgggcataggtcgagatttgctcgccttacaacaaaaactcggtcacgccgcc
gccgtcaccttcagcgacaacgccaacgaatttgaaaaagaacacatcaccaattggaac
ataggtaaattacccgattcgattaaatttgcgcgcggcaagcaacaattgaccggcttt
ttaggcttgcaagtgcaaagcgatggcagcattgctttgaaattgtttgatacggctttg
gctgccgaacaagcgcattttgatggcgtgattgcattaatgagccgccaactcaaagaa
cacatcaaagatttgaacaaaggcttggcatcgtttacccaagtggcgatgttgctcaaa
catttgggtgtggatgctttgcgtgaagacatcactcgcgctgtttgccaacgggcgttt
attggcgatgatgatttgccgcgggacgaaaaagatttcaaagagcaaatcaaacgcgcg
cgcagccgtttgcctgcggtaaaagaggctttgaaccaatatttgctggcagtggcgcaa
gaatacgcaccattgatacaacgcttgcaaaaacaccctttaaaaaatgtgttgcaacaa
caattgaatgctttgatttacgacggttttgtcagccaaacgccttggagccaatggccg
catttggcgcgttatttaaaagccatgaatttgcgcatggacaaatacagcgccaatatg
gcgcgcgatgccgagcgtgagcgggatattcaagccttaacccaacaatggcaacaacat
ctggatgcgttaaagcgcaacaatcaagacatcaaccctgcattgcaacaattccgttgg
cacatcgaagaattgcgtgtgtcattgtttgcccaagagctgaaaacgccttatcccgtg
tctgtcaaacgcttgcaaaaacaatggagcgaattgacgcgtgtggtcaaataa
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