Vitreoscilla stercoraria: LVJ81_11660
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Entry
LVJ81_11660 CDS
T08153
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vst
Vitreoscilla stercoraria
Pathway
vst03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vst00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LVJ81_11660 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vst03021
]
LVJ81_11660 (rpoC)
03400 DNA repair and recombination proteins [BR:
vst03400
]
LVJ81_11660 (rpoC)
Enzymes [BR:
vst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LVJ81_11660 (rpoC)
Transcription machinery [BR:
vst03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LVJ81_11660 (rpoC)
DNA repair and recombination proteins [BR:
vst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LVJ81_11660 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UOO92255
LinkDB
All DBs
Position
complement(2375871..2380025)
Genome browser
AA seq
1384 aa
AA seq
DB search
MKALLDLFNPLQGAGADDEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLF
CAKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELASPVAHIWFL
KSLPSRLGMVLDMTLRDIERILYFEAFVVTDPGLTSLQRRQLLTEEDYYEHLDEYGEEFE
AKMGAEGVRELLRTLDIENEIQVLRQELESTGSDTKIKKIAKRLKVLEAFQRSGMKLEWM
IMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKR
MLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITV
GPYLRLHQCGLPKKMALELFKPFIFHKLEKLELANSIKQAKKLVEQEVPEVWDILEDVIR
EHPIMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
QEARTLMLASNNVLSPANGESIIVPSQDIVLGLYYMTRDKINGKGEGTLFADVKEVQRAY
ETRQVELATKCTVRLTEYVKNEQGGYDAVRRRYETTVGRAILSTLLPKGLAFEHINKALK
KKEISKLINVSFRVCGLRDTVIFADHLMYTGYAYSTRGGISICVDDMEVPAAKVTLLAEA
QGEVKEIEEQYRQGLVTNGERYNKVVDIWGRTGDKIAKAMMDNLSVDKVIDRDGNEVDQE
SFNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFISTH
GARKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTTDGFVMKAVVQGGDVIEPLRD
RILGRVTAEDVVDPNTNTTIVEAGTILSEALVNLIDNSGADEVKVRTPITCKTRYGLCAQ
CYGRDLARGKLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAATQVESKSNGT
ARFSSQMRYVTNNKGELIVIGRSCEVVIHDDVGRERERHKVPYGSTLMVRDGETIVAGQV
LATWDPHTRPMITEHAGRVRFENIEEGVTVAKQTDEVTGLSTLVVIDGKRRGSQARVLRP
AVRLLDENGEEIRAAGSDTPVTMAFPIGAIITVREGQEVGKGEVLARIPQASTKTRDITS
GLPRVAELFEARTPKDAGMLAEVTGTVSFGKETKGKQRLVITDVDGIVVETLISKEKQVL
VHDGQVVNRGEVIVDGAVDPHDILRLQGIEALARYIIQEVQEVYRLQGVKISDKHIEVII
RQMLRRVNIADSGETQFITGEQVERAEVMIANEKMAAEGKQPARIENILLGITKASLSTD
SFISAASFQKTTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLHYHRKRRQNNPLPE
TSAE
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgttagatttatttaaccccttgcaaggtgcaggtgcggatgatgaattt
gatgccatcaaaatcggcattgcatcaccagaaaccattcgctcttggtcttacggtgaa
gttaaaaaacctgaaaccatcaactatcgtacgttcaaacctgaacgtgatggtttattc
tgtgccaaaatttttggcccagttaaagattatgaatgtttgtgcggtaaatacaaacgc
ttgaaattcaaaggtgtgacctgcgaaaaatgtggcgtagaagtgactttgtctaaagtg
cgtcgtgagcgcatgggtcacattgaattggcgtcacctgttgcacacatttggttcttg
aaatcattgccatctcgtttgggcatggttttggacatgactttgcgtgatatcgaacgc
attttgtattttgaagcatttgtggtaaccgatcctggcttaacttctttgcaacgccgt
caattgttgactgaagaagattattacgagcatttggacgaatacggcgaagaatttgaa
gcgaaaatgggtgccgaaggtgtgcgcgaattgttgcgcactttggacatcgaaaacgaa
attcaagttttgcgtcaagagttggaatcaactggctctgataccaaaatcaaaaaaatt
gcaaaacgtttgaaagtattggaagccttccaacgctcaggtatgaaacttgagtggatg
attatggatgtgttgccagtattgccacctgatttgcgtccattggtaccgttggatggt
ggtcgttttgccacttctgacttgaatgatttgtaccgtcgtgtgattaaccgtaacaac
cgtttgaaacgtttgttggagttgcgcgcgccagacatcatcgttcgcaatgaaaaacgt
atgttgcaagaagcagtggattcgttgttagacaacggccgtcgcggtaaagcgatgact
ggtgcgaacaaacgcccattgaaatcattggctgacatgatcaaaggtaagggcggtcgt
ttccgtcagaacttgctgggtaaacgtgtggactattcaggccgctctgtgattaccgta
ggtccttacttgcgtttgcaccaatgtggtttgcctaaaaaaatggcattggaattgttc
aaaccattcattttccacaaattggaaaaattggaattggccaactccatcaaacaagcc
aaaaaattggtagaacaagaagtgccagaagtttgggacatcttggaagacgtgattcgc
gaacatccaatcatgttgaaccgtgcgcctaccttgcaccgtttgggtattcaagcgttt
gaaccgattttgattgaaggcaaagccattcaattgcacccgctcgtttgtgcggcattt
aacgccgactttgacggtgaccaaatggcggttcacgtaccattgtctttggaagcgcaa
caagaagcgcgtacattgatgttggcgtcaaacaacgtgttgtctccagccaatggtgag
tcaatcatcgtaccttctcaagacatcgtcttgggtctgtattacatgacgcgtgacaaa
atcaatggcaaaggcgaaggcactttgttcgcggatgtcaaagaagtacaacgtgcatac
gaaacccgccaagttgaattggcaaccaaatgtacagtacgtttgaccgaatatgtgaaa
aacgaacaaggtggttacgatgctgtaagacgtcgttatgaaaccactgttggtcgcgcc
attttgtctactttgttacctaaaggcttggcatttgaacacattaacaaagcattgaaa
aagaaagaaatttctaaattaatcaatgtgtcgtttcgtgtgtgcggcttgcgagatacg
gtgatttttgctgaccacttgatgtacacaggttatgcatattctactcgtggtggtatt
tcgatttgtgtggacgacatggaagtgccggctgcaaaagtaactttgttggcagaagct
caaggcgaagtgaaggaaatcgaagaacaataccgtcaaggtttggtaaccaatggcgaa
cgctataataaagtggtcgacatttggggtcgtacaggcgataagattgccaaagcgatg
atggacaatttgtctgtggacaaagtcattgaccgtgatggtaacgaagttgaccaagaa
tcattcaactcaatttacatgatggctgactctggtgcccgtggttcggcagcacagatc
aaacagttgtcaggtatgcgtggtttgatggcaaaacctgatggttcgatcattgaaaca
ccaattacgtctaacttccgtgaaggcttgacggtattgcaatactttatttcaacacac
ggtgcgcgtaaaggtttggcggatacggcgttgaaaacagcgaactcaggttacttgaca
cgtcgtttggttgacgtgacccaagacttggtggtgattgaggacgattgtggtaccact
gacggctttgtcatgaaagcagttgtacaaggtggtgacgtgattgagccgttgcgcgat
cgtatcttgggccgtgtgactgcagaagatgtggttgaccctaataccaatacaacgatt
gttgaagctggcactatcttgtctgaagctttggtgaacttgattgacaattctggtgcg
gatgaagttaaagttcgtacaccaattacttgtaaaacacgttatggcttgtgtgctcaa
tgttacggtcgtgacttggcgcgtggtaagttggttaatacaggtgaagcagttggtgtg
attgctgctcaatcgattggtgagcctggtactcagttgacgatgcgtacgttccatatt
ggtggtgctgcgtctcgagctgctgcggcaactcaagttgaatctaaatctaacggtacg
gcacgtttctctagccaaatgcgttatgtaaccaacaacaaaggcgaattgattgtcatc
ggtcgttcttgtgaagtggtgattcatgacgatgtgggtcgtgagcgtgaacgtcataaa
gtgccttacggttctactttgatggtacgtgatggtgagacgattgttgcaggtcaagta
ttggcaacatgggatccgcatacccgtccaatgattaccgaacatgcaggtcgcgttcgc
tttgaaaacatcgaagaaggtgtgactgttgccaaacaaactgacgaagtgactggtttg
tctactttggtggtgattgatggtaaacgtcgcggttcacaagcgcgagtattgcgtcca
gcggttcgtttgttggatgaaaatggtgaagaaattcgtgctgcaggttctgatacacct
gtgacgatggcattcccaatcggtgcgattattacggtgcgtgaaggtcaagaagtgggt
aagggtgaagtattggctcgtattcctcaagcttctaccaaaactcgtgacattaccagt
ggtttgcctcgtgtagctgaattgttcgaggctcgtacaccaaaagacgcgggtatgttg
gcggaagtgactggtacggtttcgttcggtaaagaaaccaaaggcaaacaacgtttggtg
attaccgatgttgatggcatcgtggttgaaactttaatctcgaaagagaaacaagttttg
gtgcatgacggtcaagttgtaaatcgcggtgaggtgattgtggatggtgcggttgaccca
cacgacatcttgcgtttgcaaggcattgaagctttggcgcgctatatcattcaagaagtg
caagaagtttaccgcttacaaggcgtgaagatttctgacaaacacattgaagtgatcatc
cgtcaaatgttgcgtcgtgtgaacattgctgattcaggcgaaactcagttcattactggt
gaacaagttgagcgtgcggaagtgatgattgccaacgaaaaaatggcggcagaaggcaaa
caacctgcacgcattgaaaacattttgttgggtattaccaaagcatcgttgtcgactgat
tcgttcatttctgcagcttcgttccaaaagactactcgtgtcttgactgaagcggcgatt
atgggcaaacgtgatgatttgcgtggcttgaaagaaaacgtgattgtgggtcgtttgatt
cctgcaggtacgggtttgcattaccatcgcaagcgtcgtcaaaacaatccattgcctgaa
acttcagcagaataa
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