Varunaivibrio sulfuroxidans: P3M64_00150
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Entry
P3M64_00150 CDS
T08892
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vsu
Varunaivibrio sulfuroxidans
Pathway
vsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P3M64_00150 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsu03019
]
P3M64_00150 (rnr)
03016 Transfer RNA biogenesis [BR:
vsu03016
]
P3M64_00150 (rnr)
Enzymes [BR:
vsu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
P3M64_00150 (rnr)
Messenger RNA biogenesis [BR:
vsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P3M64_00150 (rnr)
Transfer RNA biogenesis [BR:
vsu03016
]
Prokaryotic type
tRNA degradation factors
P3M64_00150 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WES30824
LinkDB
All DBs
Position
complement(36999..39389)
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AA seq
796 aa
AA seq
DB search
MTPSSHKPAPFPSKREILDFIAQSPSNAGKREIARAFRLDGEQKMRLKKVLREMQDEGLL
QKGRGRRFAEPGSLPAVTVLEIGDLDIDGDVIARPLTWNTDDGPPPLIYMAPERRGQSAL
GIGDRVLARLTRIEDAADGRLAYEGRTIRRISAQPSEVLGVFKPDESGGGGRLLPTNKRV
KHEFIVSSDHAADARPGDLVRAEILPGRPLGLRRARVVERLSPTGPQAISLIAIHEYDIP
HVFSIEAVTQAEKAKAAPLGKREDLRKAPIITIDGADARDFDDGVFAEPDPDPANPGGWK
LIVAIADVAWYVRPGDALDRDAYGRGNSVYFPDRVVPMLPEALSNGWCSLRPDGDRPCLC
AHMTIDADGALKKHHFTRALIRSHARTTYEQVQGAMDGAPDETTAPLLEGVIRPLYGAYR
ALWTAREKRGVLDLDLPERKVVLDDAGNVARIENRVRLDSHKLIEEFMILANVAAAQTLE
KSGLPCMYRIHDEPSREKLDALRQFLDGVNIPLAKGQVIRSTQFNAILERARDTPYAQMV
NDVVLRSQAQAEYSPDNIGHFGLALARYSHFTSPIRRYSDLLVHRALIRALKLGDGGLED
APKDFADIGVHLSQTERRAAGAERGAVDRFTALFLADRVGSTFSGRINGVTRFGLFVTLD
DSGADGLVPIRTLPDDYYVHDETHHRLKGRKNGIEYRLGQKVEVVLVEADPVTGGMVMRL
SDDEEPPQGTPRKINDGKPGRESRPTRPGAKKSHAKGKGKGKKTTTAKIKAKIKAKGASK
AARRRAANTAPTKPTP
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
ttgactccttcttcgcataaacccgcgccgttccccagcaagcgggaaattctcgacttt
atcgcgcaatctccatccaatgccggaaaacgggaaatcgcgcgcgcctttcgcctcgac
ggcgaacagaaaatgcgcctgaaaaaagtgctgcgcgagatgcaggacgagggtctgctg
caaaaggggcgcgggcggcgtttcgccgaaccgggcagcctgcccgccgtcaccgttctc
gagatcggcgatctggatatcgacggcgacgtcatcgcccggccactgacctggaacacc
gacgacggtccgccgccactgatttacatggcgcccgaacggcgcgggcaatcggccctg
ggcatcggcgatcgggtgctcgcgcgcctgacgcgcattgaggacgccgccgacggacgc
ctcgcctacgagggccgcacgatccgacgcatcagcgcccaaccatcggaggttttgggc
gttttcaagcccgatgaaagcggtggcggtggccgccttctgcccaccaacaaacgcgtc
aaacatgaattcatcgtcagttcggatcacgccgccgacgcccggccgggcgatttggtg
cgcgccgaaattttacctggacggcccttggggctgcgccgggcgcgcgttgtcgagcgc
ctgtcgccgaccggcccgcaggcgatcagcctgatcgcgatccatgaatacgacatcccc
cacgtcttttcgatcgaggcggtcacccaggccgaaaaggccaaggccgcgccgctgggc
aagcgcgaggatttacgcaaggcgccgatcatcaccatcgacggcgccgacgcgcgcgac
ttcgacgatggcgtcttcgccgaacccgaccccgatcccgccaacccggggggctggaaa
ctaatcgtcgcgatcgccgatgtcgcgtggtatgtgcgcccgggcgacgccctcgaccgt
gacgcctatgggcggggaaattcggtttattttcccgaccgggtggtgccgatgctgccc
gaggcgttgtccaacggctggtgctcgctacgtcccgacggggaccgcccctgcctgtgc
gcgcacatgaccatcgacgccgacggggcgctgaaaaagcaccatttcacccgggcgctg
atccgctcgcacgcccgcaccacgtacgagcaggtgcaaggcgcgatggacggcgcaccc
gacgaaaccaccgcgcccttgttggaaggcgtgatccgtccgctctacggcgcctaccgg
gcgctgtggacggcgcgtgaaaagcgcggcgtgctcgatctcgacctgcccgaacgcaag
gtcgtcctcgacgacgcgggcaatgtggcgcggatcgaaaatcgagtccgcctggacagc
cacaagctgatcgaggaattcatgatcctggccaacgtggcggcggcgcaaaccttggaa
aaaagcggcctgccgtgcatgtaccgcatccacgacgaaccgagccgggaaaagctcgac
gccctgcgccagttcctggacggcgtcaatattcccctcgccaagggccaggtgatccgc
tccacccagttcaacgcgatcttggagcgcgccagggacaccccctacgcccaaatggtc
aacgacgtcgtcctgcgctctcaggcccaggccgaatacagccccgacaatatcggccat
ttcggactcgccctggcgcgctatagccacttcacctcgccgatccggcgctacagcgac
cttttggttcaccgcgccctaatccgcgccctcaagctgggcgacggcgggcttgaggac
gcgcccaaggacttcgccgacatcggcgtccacctgtcgcaaacggaacggcgcgccgcc
ggggccgaacggggcgcggtggaccgcttcaccgcgttgttcctcgccgaccgtgtcggc
tcgaccttcagtgggcggatcaacggcgtcacccgtttcggcctgttcgtcaccctcgac
gacagcggcgccgacggcctcgtgccgatccgcaccctgcccgacgattactatgtccac
gacgaaacccaccaccgcctgaagggacgtaaaaacggcattgaatatcgcctgggacaa
aaggtggaggtcgtactcgtcgaagccgatccggtaaccggcggcatggtgatgcgcctg
tcggacgacgaagagccgccacaaggaacgccccgaaaaataaacgatggaaaaccgggc
cgagaaagccgccccacgcgtcccggcgcaaagaaaagccacgccaagggcaagggcaag
gggaaaaagacgaccacggccaagatcaaggctaaaatcaaggccaagggcgcatccaag
gccgcccggcggcgcgccgccaataccgcaccgacaaaaccaaccccctga
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