Varunaivibrio sulfuroxidans: P3M64_03240
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Entry
P3M64_03240 CDS
T08892
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vsu
Varunaivibrio sulfuroxidans
Pathway
vsu03030
DNA replication
vsu03430
Mismatch repair
vsu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P3M64_03240 (dnaE)
03430 Mismatch repair
P3M64_03240 (dnaE)
03440 Homologous recombination
P3M64_03240 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsu03032
]
P3M64_03240 (dnaE)
03400 DNA repair and recombination proteins [BR:
vsu03400
]
P3M64_03240 (dnaE)
Enzymes [BR:
vsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
P3M64_03240 (dnaE)
DNA replication proteins [BR:
vsu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
P3M64_03240 (dnaE)
DNA repair and recombination proteins [BR:
vsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
P3M64_03240 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
HROB
Motif
Other DBs
NCBI-ProteinID:
WES31401
LinkDB
All DBs
Position
complement(710480..713959)
Genome browser
AA seq
1159 aa
AA seq
DB search
MAHADFVHLRVHSAYSLSEGATRIKDLVRLCRENRMPAVAVTDTNNLFSALEFSLAASDG
GVQPIIGCQVAVDLGADEPRAPRTAPKERARTPALVLLAQNAAGYGNILKLLSRAYLDGE
DVDDPKVTLDDLAAHGAGVIALSGGPGGPVGRLLLEGRADDAEKLMRRLAEIYRGRLYVE
LMRHDLGDEKRTEEAFLDLAYDLDLPLVATNEVFFPDKEMYTAHDALICIAESAYVSQDE
RRKLTQEHYFKSAGEMKALFADLPEAIANTLVIAKRCAFKVDKIAPILPPFDCGQGKTEE
DELRTQAHAGLIARLETQVWSADMDAAAREAAAKPYFERLDYELNIIVQMGFPGYFLIVS
DFIKWSKEQGIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDID
FCQDRRDEVIHYVQEKYGRDRVAQIITFGKLQARAVIRDVGRVLEMPYGQVDKISKLIPS
NPANPMTLSEAINAEPQLREMIRGDETVKRLVDTALPIEGLYRHASTHAAGVVIADRPLD
QLVPLYRDPRSDMPVTGFNMKWVESAGLVKFDFLGLKTLTVLAKAVEFAAEGGAEVDLST
IPLNDKTTFAMLARAETAGVFQLESQGMRDVLRQLRPDTFEDIIAVVALYRPGPMENIPS
YIKRKHGEETPDYLYPTLEGILKETFGIMIYQEQVMQIAQELSGYTLGSADLLRRAMGKK
IKEEMDKQRVLFVEGAEARGVPGAKADEIFDQVAKFAGYGFNKSHAAAYALVAYQTAYMK
ANYPLEFMAALMTLDMTNTDKLGGYRQELVRIGAPLHTPDINKSSVFFKVERDRDNKAVA
IRYALAAIKNVGEAAMRSVVEEREKGGLFRDINAFASRLDGHAVNKRSLENLVRAGAFDG
LNSNRRQLLEGVNVVLGHASAATRERESDQIGLFGGEATPAPALRLPEVSDWSVMDRLRE
EFSAIGFYLSAHPLDAYGKSLERIKAQPIAQVLSQGRSGAVNLAGTMVSKREMVSAKGNK
FAFVQFSDASGAFEVTVFSEVLSQAAEMLVPGNSLFIKAAVQFEGDTPRMTAHSMELLDK
VTARTASGLKIVIDAPTALPNLAGLLGEVQGKGQGEVRVAARLDALNEVEINLKGRYNIT
PDILQSVRLMVGVSDVQEL
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggcacatgcagatttcgttcatcttcgggttcattccgcttattcgctttctgaaggc
gcgacacgcatcaaggatctggtgcgtttgtgccgggaaaaccgcatgcccgcggtggcg
gtgaccgacaccaacaacctgttcagcgccctggagttttccttggccgcgtcggacggc
ggcgtgcagccgatcatcggttgtcaagtggcggtcgatcttggcgccgacgagccacgc
gcaccgcgcaccgcgcccaaagaacgcgcgcgcacgccggcgctggtgctgctggcgcaa
aacgccgcgggctatggcaatatcttgaaattgctcagccgcgcctacctcgacggcgag
gatgtcgatgatcccaaggtgacgcttgacgatttggcggcccacggcgcgggcgtcatc
gcgcttagcggcggccccggcgggccggttgggcgattgctcttggagggccgcgcggac
gacgccgaaaagctgatgcgccgcctggcggaaatttatcgggggcgtttgtatgtcgaa
ctgatgcgccacgacttaggcgatgaaaaacgcaccgaggaagcgttcctcgatctcgcc
tacgatctcgacctgccgttggtcgccaccaacgaagtttttttccccgacaaggaaatg
tacaccgcccacgacgccctgatctgcatcgccgaaagcgcctacgtctcgcaggacgag
cggcgcaagctaacgcaagaacactatttcaagtcggccggggaaatgaaggccctgttc
gccgaccttcccgaggcgatcgccaataccttggtgatcgccaaacgctgcgcctttaag
gtcgataagatcgcgcccattttgccgcccttcgactgcgggcaaggcaagaccgaggag
gatgagctgcgcacccaggcgcacgccggcctgatcgcccgcctggaaacccaggtgtgg
tcggcggacatggacgccgccgcgcgtgaagcggcggcaaaaccctatttcgagcgtctg
gactacgaactcaatatcatcgtccagatgggctttcccggatattttctgatcgtttcg
gattttatcaagtggtccaaggagcagggcatccccgtcgggccggggcgcggctcgggc
gcgggttcggtggtggcctgggcgctgacgatcaccgacctcgatccgttgcgcttcggg
ttgctgttcgaacgcttcctcaatcccgaacgcgtcagcatgcccgatttcgatatcgat
ttctgccaggatcgccgcgacgaagtgattcattacgttcaggaaaaatacggccgcgac
cgggtcgcccagattatcacgttcggaaagctccaggcccgcgccgtgatccgcgacgtc
gggcgggtgctcgaaatgccgtacgggcaggtcgataaaatttccaagctgatccccagc
aatccggccaatccgatgaccctgagcgaggcgatcaacgccgagccgcaattgcgcgaa
atgatccgcggcgacgaaacggtcaagcgcctggtcgataccgcgctgccgatcgagggg
ctgtatcgccacgcctcgacccatgccgccggcgtggttatcgccgaccgcccgctcgac
caactggtgccgctttaccgcgacccacgctcggacatgccggtgaccgggttcaacatg
aaatgggtggaatcggcggggctggtcaagttcgactttttgggcctgaaaaccctgacc
gttcttgccaaggcggtcgaattcgccgccgagggcggggccgaggtggacctttcgacc
atcccgttgaacgacaaaacgaccttcgcgatgctggcgcgcgccgagacggcgggggtg
ttccagttggaaagccagggcatgcgcgacgtcctgcgtcagctcaggcccgataccttc
gaggatatcatcgccgtcgtcgccttgtatcgtccggggccgatggaaaacatccccagc
tatatcaagcgcaagcacggcgaggagacgcccgattacctgtatccgacgcttgaaggc
atcctcaaggagaccttcggcatcatgatctaccaggaacaggtgatgcagatcgcccaa
gaactttccggctacaccctgggcagcgcggacctgttgcgccgggcgatgggcaaaaag
atcaaggaggaaatggacaaacagcgggtcctgttcgtcgaaggcgcggaggcgcgcgga
gtacccggcgccaaggccgatgaaattttcgatcaggtcgccaagttcgccggctacggt
ttcaataagtcccatgccgccgcctatgccctggtggcctaccagacggcgtatatgaag
gccaattaccccctcgaattcatggccgccctgatgaccctggacatgaccaataccgat
aagcttgggggatatcgacaggagcttgtgcgcatcggcgcccccctccataccccggat
atcaataagtcttcggttttttttaaggtcgagcgtgatcgggacaacaaagccgtggcc
atacgctatgccttggccgccattaaaaacgtgggcgaggcggcgatgcgctcggtcgtc
gaagaacgcgaaaaaggcggccttttccgtgatatcaacgcgttcgcctctcgtttggat
ggtcacgccgtcaacaaaagatccttggaaaatttggtgcgcgccggggcctttgacggc
ctgaattccaatcgtaggcaactgttggagggtgtcaacgtcgttctgggacacgccagc
gccgccacgcgcgagcgcgaaagcgaccaaatcggcctgttcggcggcgaagcgaccccg
gccccggccttgcggcttcccgaagtttcggactggtcggtaatggaccgcctgcgcgag
gaattttcggcgatcgggttctatctgtccgcccatccgctggacgcttacggcaaaagc
ctggaacggatcaaggcccagccgatcgcccaggtcctgtcgcagggccgctcgggcgcg
gtcaatctggcgggaaccatggtttccaagcgcgagatggtgtcggccaagggcaataaa
ttcgcgttcgtgcagttttccgacgcctcgggcgcgtttgaagtgacggtgttttccgag
gtgctgagccaggccgccgagatgttggttccgggaaattccttgtttatcaaggccgcc
gtgcagttcgaaggtgacaccccgcggatgaccgcccattccatggagcttttggacaag
gtcacggcgcgcaccgccagcgggttgaaaatcgtgatcgatgccccgaccgcactgccg
aatttggccggtcttttgggggaagtccaaggcaaaggccagggcgaggtgcgcgtcgcc
gcccgtctggacgccttaaacgaggtcgaaatcaatctcaaggggcgctacaacatcacc
cccgacatccttcaatccgttcgtctcatggtgggcgtgtccgatgttcaggagctatag
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