Varunaivibrio sulfuroxidans: P3M64_07960
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Entry
P3M64_07960 CDS
T08892
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
vsu
Varunaivibrio sulfuroxidans
Brite
KEGG Orthology (KO) [BR:
vsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsu03032
]
P3M64_07960 (gyrB)
03400 DNA repair and recombination proteins [BR:
vsu03400
]
P3M64_07960 (gyrB)
Enzymes [BR:
vsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
P3M64_07960 (gyrB)
DNA replication proteins [BR:
vsu03032
]
Prokaryotic type
DNA Topoisomerases
P3M64_07960 (gyrB)
DNA repair and recombination proteins [BR:
vsu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
P3M64_07960 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_insert
GyrB_hook
Toprim_4
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
WES29588
LinkDB
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Position
complement(1684770..1687247)
Genome browser
AA seq
825 aa
AA seq
DB search
MTDQNPELENGGADATDAGEKYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEV
VDNAIDEALAGYCDLVRVTLNADGSVTVSDNGRGIPVGIHHEEGVSAAEVIMTHLHAGGK
FNQNSYKVSGGLHGVGVSVVNALSDWMDVRIFRDGKEHYVRFERGDTARSLEVVGSAPLK
ENGAPYTGTEITFMASSETFTMTEYDFATLEHRLRELAFLNSGVALRLTDARHVDEKVVD
LHYDGGLQAFVTYLDRSKTPLHQPCISVNGEKDGIVVEVAMQWNDSYHESTLCFTNNIPQ
RDGGTHLAGFRAALTRTINAYATKTGLTKKEKVAITGDDSREGLTCVISVKAPDPKFSSQ
TKDKLVSSEVRAVVENVFGEQLDRWFEENPGEAKKVIGKIVEAAAAREAARKARELTRRK
GALDMASLPGKLADCQQRDPALSELFIVEGDSAGGSAKQGRDRSNQAILPLKGKILNVER
ARFDKMLSSAEIGTLIAAMGTGIGREDFNPDKCRYHKIIIMTDADVDGSHIRTLLLTFFY
RQMPELIERGYLYIAQPPLYRIKRGNSEVYLKDDDALEEYLFNAALGEGTVLTTDEGVQI
ASDDLRALVFTARRVKKLLHNAARHVPMAMLEQAAILGALNVDILADENRAAEVAGVMAK
RLDALEDPLERGWRGMIDDDGGMVFVRTLRGVRQSHAIDSALVRSAEARQLDRMASELQR
TFAKHGVLQVKDKEYPVTGPVDLVDTVMTLGRKGIAIQRYKGLGEMNPEQLWETTLDPNA
RTLLQVKIEHVDSAGEIFSTLMGDLVEPRRDFIQENALKVANLDV
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccaaaatcccgaactggaaaatggtggagccgacgcgaccgatgccggcgaa
aaatacgacgccggatcgatcaaggtcttgcgcggactggacgccgtgcgcaaacgtccg
ggcatgtatatcggcgataccgatgacggctcggggctgcatcatatggtttatgaggtt
gttgacaacgccatcgacgaggcgctggccgggtactgcgatctcgtccgggtgacgttg
aacgccgacggttcggtcacggtgtcggataatggccggggtattccggtcggcattcac
catgaagaaggcgtctcggcggccgaggtgatcatgacccacctgcatgccggagggaaa
ttcaaccaaaattcctataaggtttcgggtgggttgcacggggtcggcgtctcggtggtc
aacgccctgtccgattggatggacgtgcgcattttccgcgacggcaaggagcactacgtg
cgtttcgagcgcggcgacacggcccgttcgctcgaagtcgtaggctccgccccgcttaag
gaaaacggcgcgccgtacaccggcaccgagattacattcatggcgtcgagcgagaccttc
accatgaccgagtacgacttcgccacacttgagcaccgcttgcgcgaactggcgttcctc
aattcgggcgtcgccctgcgcctgacggacgcgcgtcatgtcgatgagaaagtggtcgat
ttgcattacgacggcggcttgcaggccttcgtgacgtatctggatcgctctaagaccccg
ctgcaccagccgtgtatttcggtgaacggcgaaaaagacggcatcgtcgtcgaagtggcg
atgcagtggaacgacagctatcacgaaagcacgttgtgtttcaccaacaacattccccag
cgcgatggcgggacccaccttgccgggtttcgcgccgcattgacgcgcacgattaacgcc
tacgcgacgaaaacgggattaaccaagaaggaaaaagtcgcgattaccggcgacgattcc
cgcgaagggctgacctgcgtgatttcggtgaaggcgcccgatccgaagttttcctcgcaa
accaaggataagctggtttcgtccgaggtccgcgcggtggtcgaaaatgtcttcggcgaa
cagctggaccggtggttcgaggaaaatcccggcgaggcgaaaaaagtcatcggcaagatt
gtcgaggccgccgccgcgcgcgaggccgcacgcaaggcgcgcgagttgacccggcgtaag
ggggcgttggacatggcctcgctgccgggcaagctggccgattgtcagcagcgcgacccg
gcgctcagcgaactgttcatcgtcgagggcgattcggccggcggttccgccaagcagggc
cgcgatcgctccaatcaggcgattttgccgctcaagggtaaaatcctcaacgtcgaacgg
gcgcgtttcgacaagatgctctcatcggcggaaatcggcaccctgatcgccgccatgggc
accgggatcgggcgcgaggactttaatcccgataagtgccgctatcataaaatcatcatc
atgaccgacgccgatgtcgatggcagtcacattcgcaccttgctgttgacgttcttttac
cgccagatgcccgaattgatcgagcggggctacttgtatatcgcccagccgccgctgtac
cgcatcaagcgcggcaattccgaggtttatctgaaagacgacgacgcgctggaagaatat
ttgtttaacgccgccctcggcgaaggcaccgttctgaccaccgacgaaggggtgcaaatc
gcatcggacgatctgcgcgccctggtgttcaccgcgcgccgggtcaagaagcttctgcac
aacgccgcgcgccacgtgccgatggcgatgctcgaacaggccgccattttgggcgccctc
aatgtggacatcctcgccgacgaaaaccgcgcggcggaggtggccggcgtcatggcgaaa
cgcctggacgccttggaagatcccttggagcgaggctggcgcggcatgatcgacgatgac
ggtggaatggtctttgtgcggaccctgcgcggcgtgcgccagagccacgccattgattcc
gcgctggtgcgctccgccgaggcgcgccaactcgatcgcatggcgtccgaactccagcgc
actttcgccaagcatggcgttttacaggtcaaggataaggaatatcccgtcaccggcccg
gtcgatcttgtcgataccgtgatgaccctggggcgcaaggggatcgccatccaacgctac
aaaggattgggcgagatgaaccccgaacagttgtgggaaaccaccttggaccccaatgcg
cggacattgctccaggttaagatcgaacatgtcgatagcgccggggaaattttttcaacc
ctcatgggcgatctggtcgagccgcggcgcgactttatccaggaaaacgcccttaaggtc
gctaatttggatgtttag
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