Varunaivibrio sulfuroxidans: P3M64_08280
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Entry
P3M64_08280 CDS
T08892
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vsu
Varunaivibrio sulfuroxidans
Pathway
vsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P3M64_08280 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsu03019
]
P3M64_08280 (pnp)
03016 Transfer RNA biogenesis [BR:
vsu03016
]
P3M64_08280 (pnp)
Enzymes [BR:
vsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
P3M64_08280 (pnp)
Messenger RNA biogenesis [BR:
vsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
P3M64_08280 (pnp)
Transfer RNA biogenesis [BR:
vsu03016
]
Prokaryotic type
tRNA degradation factors
P3M64_08280 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
KH_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
WES29650
LinkDB
All DBs
Position
complement(1753843..1755978)
Genome browser
AA seq
711 aa
AA seq
DB search
MFTEFKKEIEWGGRTLTLEAGKIARQADGAVMVTYGETKVLCTAVGAKSARPGLDFFPLS
VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFAKGFKNETQIICTTVAH
DMENDPDIAAMIGTSAALTISGLPFFGPIGGCRVGYIDGEYVLNPRLDQMADTELDLIVA
GTAEGVLMVESEANELSEDVLLNGVMFGHKAFQPVIDAIIALAELCAKEPWDLPEAPDEV
EGLKAKIVAAAEAPLREAYAIKDKIERVSKVAAAKDAVAAQMKADDGIDQGLLDEVLADA
LKSLEKTIVRRDILKTGMRIDGRDTKTVRPIVSEVGILPRAHGSALFTRGETQALVVATL
GTGQDEQLIDALEGSYREHFMLHYNFPPYSVGEAGRFGFTGRREIGHGKLAWRAIHPMLP
SKEDFPYTMRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPVAGIAMGLIKEDDGVA
VLSDIIGDEDHLGDMDFKVAGTENGITSLQMDIKITSITEEIMKTALAQAKDGRIHILGE
MGRAISNAREDVSSKAPRITVFQINKDKIRDVIGAGGKVIREITETTGAKIDLEDDGTVK
VAAVDDASAQQAIDWIKSLTSEPEVGAIYTGKVVKTVDFGAFVNFMGAKDGLVHISELAD
HRVGQTTDVVNVGDAVKVKLIGIDDRGKIKLSMRVVDQETGEDISDKPKAE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtttaccgagtttaaaaaagagatcgaatggggtgggcgtacgctgaccctggaggcg
ggcaagatcgcccggcaggccgacggcgccgtgatggtgacctatggcgaaaccaaggtg
ttgtgcaccgccgtcggcgcgaaaagtgcgcgccccggattggattttttcccacttagc
gttcactaccaagaaaagacctatgccgcgggcaagatcccgggcgggtttttcaagcgt
gaagcgcgtcccagcgaaaaagagactctgacctcgcgtctgatcgatcgcccgatccgc
ccgctgttcgccaagggtttcaagaacgaaacccagattatctgcaccaccgtcgcccac
gacatggaaaacgatcccgatatcgccgccatgatcggaacctccgccgcgttgacgatt
tccggcctgccctttttcgggccgatcggcggctgccgggtcggttatatcgacggcgaa
tatgtgctcaacccgcgtctcgaccagatggccgacaccgagctcgacctgatcgtcgcg
ggtaccgccgaaggcgtgctgatggtcgaatccgaggccaacgagctatccgaagacgtt
ctcctcaacggcgtgatgttcggccacaaggcgttccagccggtgatcgacgcgatcatc
gcgcttgccgagctatgcgccaaggaaccttgggacttgcccgaggcgccggacgaagtc
gaaggcctgaaggcgaagatcgtcgccgccgccgaagcgccgctgcgcgaggcttatgcg
atcaaggacaagatcgagcgcgtaagcaaggtcgccgccgccaaggacgccgtcgccgca
cagatgaaagccgatgacggtattgaccagggattgctcgacgaagtcctcgccgacgcc
ttgaagtccctggaaaaaacgatcgtgcgccgcgacatcttgaaaaccgggatgcgtatc
gacgggcgcgacaccaaaaccgtgcgcccgatcgtttcggaagtcggtattctgccgcgc
gcgcacggttcggccctgttcacccgcggcgaaactcaggccctggtggtcgccacctta
ggcaccggccaggacgaacagttgatcgatgctctcgaaggctcgtaccgcgaacacttc
atgctgcattataactttccgccgtattcggttggcgaagcaggtcgttttgggtttacc
ggacggcgtgaaatcggccacggtaaacttgcctggcgggcgatccacccgatgctgccg
tcgaaggaagacttcccctacaccatgcgggtggtttccgagattaccgaatccaacggc
tccagctcgatggcgtcggtgtgcggcgcatccctgtcgctgatggacgccggcgtgccg
ttgaagcggccggtggcgggtatcgccatgggcctgatcaaggaagatgacggcgtcgcc
gtgctctccgacatcatcggcgatgaagatcatctcggcgacatggatttcaaggtcgcc
gggacggaaaacggcatcacctcgttgcagatggacatcaagatcacctcgatcaccgag
gagatcatgaagacggcgctggcccaggccaaggacggtcgtattcacatcctcggcgag
atgggccgggcgatttccaacgcccgcgaggacgtcagctcgaaagcgccgcgtattacc
gttttccagatcaataaagacaaaatccgcgacgttatcggggccggcggcaaggtgatc
cgagagatcaccgagaccaccggagccaagatcgatctcgaggatgacggcacggtcaag
gttgccgccgtcgatgacgcttcggcgcagcaggcgatcgattggatcaagtcattgacc
agcgaaccggaggtcggcgcgatttacaccggcaaggtcgtcaagacggtggacttcggc
gctttcgtcaacttcatgggggccaaggatggcctcgtgcacatcagcgagttggccgac
catcgcgtcgggcagaccacggatgtggttaacgtcggtgacgcggtgaaggtcaagctg
atcggaatcgacgaccgcggtaaaatcaagttgtcgatgcgggtcgtcgatcaggagacc
ggcgaagacatcagcgacaagccgaaagctgagtga
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