Varunaivibrio sulfuroxidans: P3M64_09635
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Entry
P3M64_09635 CDS
T08892
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
vsu
Varunaivibrio sulfuroxidans
Brite
KEGG Orthology (KO) [BR:
vsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsu03016
]
P3M64_09635 (thpR)
Enzymes [BR:
vsu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
P3M64_09635 (thpR)
Transfer RNA biogenesis [BR:
vsu03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
P3M64_09635 (thpR)
BRITE hierarchy
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
DUF5375
Motif
Other DBs
NCBI-ProteinID:
WES29899
LinkDB
All DBs
Position
2043607..2044173
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AA seq
188 aa
AA seq
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MFRLFVAIGLPHPLPDGLDALRRELPGAKWVASDNLHLTLRFIGAVDESAVAEINVALAT
LSAPPLIVRPTAVGVFSRHNIPAHGHMAHTLWLGVEARPDLMALAQRIDALMAARGIGAR
ERDFFPHVTLARLKRVREQDLEAYLARAGRVRVAPVAADRCTLYRSDQAEDGVRYVALRS
YPLDGAAP
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
gtgtttcgcctcttcgtcgccatcggattgccgcacccgcttcccgatggcttggacgcc
ctacgtagggaattgcccggggccaagtgggtggcgtcggacaatctgcacctgaccctg
cgtttcatcggcgcggtggatgaaagcgccgtcgccgagatcaacgtcgccctggcgacg
cttagtgcgccgccgttgatcgtaaggccgacggcggtcggcgttttttctcgacataac
atccccgctcacggccacatggcccacaccctgtggctgggggtcgaggcgcggcccgac
ctgatggcgctggcgcaaaggatcgacgcgttgatggcggcccgggggatcggggcgcgg
gagcgggatttctttccccacgtgacgctggcccgtctgaaacgagtccgtgagcaggac
ctcgaagcctatctcgcccgcgctggccgggtgcgcgtcgcccccgtcgcggcggaccgc
tgtaccctttaccgcagcgatcaggccgaagacggtgttcgctacgtggcgctgcgaagc
tatccgctggacggcgccgcgccctga
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