Varunaivibrio sulfuroxidans: P3M64_12110
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Entry
P3M64_12110 CDS
T08892
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vsu
Varunaivibrio sulfuroxidans
Pathway
vsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P3M64_12110 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsu03019
]
P3M64_12110 (recQ)
03400 DNA repair and recombination proteins [BR:
vsu03400
]
P3M64_12110 (recQ)
Enzymes [BR:
vsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P3M64_12110 (recQ)
Messenger RNA biogenesis [BR:
vsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P3M64_12110 (recQ)
DNA repair and recombination proteins [BR:
vsu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
P3M64_12110 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
AAA_22
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
WES30369
LinkDB
All DBs
Position
complement(2587777..2589576)
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AA seq
599 aa
AA seq
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MPLAALKNVFGYDRFRPGQHDIIQAILDGAHVLAVMPTGAGKSMCFQIPALVLGGLTIVV
SPLVALMEDQVAALKLAGVEAETINSSRSRDSNVAAWRRVASGQTRLLYLAPERLMTARM
IAALQRLPVRLIAIDEAHCLSRWGPSFRPEYESLTRLGELFLGVPIAALTATADAATQRD
IVDKLFAGAGKVFVSGFDRPNIHLAVDARTERNRQLLDIVRAHPGESGIVYCLSRDKTEK
TARLLCENGYRALPYHAGMDAAERTHHQKIFMDAPGVIIVATIAFGMGIDKPDVRFVAHT
DMPGSVEAYYQEIGRAGRDGEAATAHMIYGLDDVRMRRMFIEQENTADDHKQREHKRLDA
LIGYCETPGCRRQTLLAYFGETTAPCGNCDMCLNPPELHDASDSARIALGAVEQSGQIYG
AAHIIDIVRGAKTQKITSAGHHALAAYGAGAETPKERWRSILRQMTGAGFLRLDVAGYGG
LAITSKGRDLMAGTEIFQCRVERHGITAQNRKTNGKTSGVLADLNDEERALFDALKSLRR
ELAHERGVPAYAVFTDRTLAEMARKKPTDIDAFSRIHGVGVSKVRDFAATFLGEIAHAE
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcgccgctttaaaaaacgtcttcggatacgaccggtttcgccccggccagcac
gacattattcaagccatattggacggcgcgcatgttctggcggtgatgcccacgggggcg
ggaaaatccatgtgttttcagattccggccctggtcttgggcgggttgaccatcgtggtt
tcgccgctggtggcgctgatggaagatcaggtcgcggcgctaaagctggcgggggtcgag
gccgaaaccatcaattcgtcgcggagccgagatagcaacgtcgccgcctggcggcgggtc
gcaagcggccaaactcgcctgctgtacctggccccggaacgattgatgaccgcgcgcatg
atcgccgcgttgcagcgcctgcccgtgcgcctgatcgccattgacgaggcccattgcctg
tcgcgttggggaccgtcgttccgccccgaatatgaaagcctgacccgccttggcgagctg
ttcctcggtgttcccatcgccgccctaaccgcgaccgccgacgcggcgacccagcgcgac
atcgtcgataaattgttcgccggcgccggaaaagtcttcgtttccgggttcgaccgtccc
aacattcatctcgccgtggacgcgcgcaccgagcgcaaccgccaattgctggatatcgtg
cgcgcccatcccggcgaaagcggaatcgtctattgcctgtcgcgggacaagaccgaaaaa
acggcgcgccttttgtgcgaaaacggctatcgcgccctgccctaccacgccgggatggat
gccgccgaacggacccatcatcaaaaaatcttcatggatgcgcccggcgtcatcatcgtc
gccaccatcgcctttggcatgggaatcgacaaacccgacgtgcgtttcgtcgcgcacacc
gatatgccgggcagcgtcgaggcctactaccaggaaatcgggcgcgccggacgcgacggg
gaggcggcgacggcgcatatgatttacggtttggacgacgtgcgcatgcggcgcatgttt
atcgaacaggaaaacaccgcggacgaccataaacagcgcgaacacaaacgtctcgacgcc
ttgatcgggtattgcgaaacaccgggttgccgccgtcagacgctacttgcctacttcgga
gaaaccacggcgccgtgcggcaattgcgacatgtgcctgaacccgccggaactgcacgac
gccagcgacagcgcgcgcatcgcccttggcgcggtcgaacaaagcgggcaaatctacggc
gcggcccacatcatcgacatcgtgcgcggggcgaaaacgcagaagatcacatccgccggc
caccatgccctggcggcctacggcgcaggcgccgaaaccccgaaggagcgctggcgttcg
atccttcgtcagatgaccggcgcgggatttttgcgcctcgacgtcgccgggtacggtggg
ctcgcgatcacttctaagggacgcgacctgatggccggaacggaaatattccagtgccgc
gtcgagcgccacggcatcacggcgcaaaaccgcaagacaaacggcaaaacatccggcgtc
ctcgccgacctgaacgacgaggagcgcgccttgttcgacgccttgaaaagcttgcgccgc
gaactggcgcacgaacggggggtgcccgcctacgccgttttcaccgaccgcaccctggcc
gaaatggcgcggaaaaaacccaccgatatcgacgccttttcccgcatccacggtgtcgga
gtctccaaggtgcgcgatttcgccgccactttcctgggcgaaatcgcacacgccgaataa
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