Varunaivibrio sulfuroxidans: P3M64_12335
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Entry
P3M64_12335 CDS
T08892
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vsu
Varunaivibrio sulfuroxidans
Pathway
vsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P3M64_12335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsu03019
]
P3M64_12335
Enzymes [BR:
vsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P3M64_12335
Messenger RNA biogenesis [BR:
vsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P3M64_12335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WES30413
LinkDB
All DBs
Position
2637315..2638607
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AA seq
430 aa
AA seq
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MKFTDLNLIEPIERAIAAQGYTAPTPIQAQSIPYLLAGKDLLGVAQTGTGKTAAFALPLL
QRLVQSGARPTSGAPRALILAPTRELASQIDACIKTYARHLRLFHTVVFGGAPMRPQVRD
LQRGVDILVATPGRLLDHINQRNVRLNGVETFILDEADRMLDMGFVGDVKKMAAMLPKAH
QTVLFSATMPPSVAALAQGLLNDPVRVEVAAQATTAERVEQRVLFVAKQKKRDLLTSLMD
DEKIARVLIFTRTKHGADRVAKHLDQCGVKAGAIHGNKTQRARENALRAFRGGHLRALVA
TDIAARGIDVEGVTHVINFELPNDPESYVHRIGRTARGGADGIALSFCDGEERGYLRSIE
KIIRQSVTVEEDHPFHSAEIANDPGFGAAKPKKRGGFKKRRSDARSQQNAGKPWQKGKPS
TPSRRSKKVA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaccgatcttaacctgatcgaacccatcgagcgcgccatcgccgcccagggc
tataccgccccgacgccgatccaagcccaatcgatcccctatcttctcgccggcaaggac
cttttgggcgtcgcccagaccggaaccggcaagaccgcggcgttcgccctgcccctgctg
cagcgtctggttcaatccggcgcgcggccgacctcgggcgcgccgagggccttgatcctg
gctccgacccgcgagttggccagccagatcgacgcctgcatcaaaacctatgcccgccat
ttgcggctgttccacaccgtggtcttcggcggcgcgccgatgcgcccgcaggtacgtgat
ctgcaacgcggcgtggacatcctcgtcgccacgccgggacgcctgctcgaccatatcaat
cagcgcaacgtgcgcctgaacggggtcgaaacgtttatcctcgatgaagccgaccgcatg
ctcgacatgggcttcgtcggcgacgtcaagaaaatggcggcgatgttgcccaaggcccat
cagacggttttgttttcggcgacgatgccgccctccgtcgccgccctggcgcaagggttg
ctcaacgacccggtgcgcgtcgaggtcgccgcccaggcgacgaccgccgagcgggtcgaa
cagcgggtccttttcgtcgccaagcaaaagaagcgcgatctgttgaccagccttatggac
gatgaaaaaattgcccgggtgctgatttttacacgcaccaaacacggcgcggaccgggtc
gccaagcacctcgatcaatgcggcgtcaaagcgggcgccattcatggcaacaagacacag
cgcgcccgtgaaaacgccctgcgcgccttccgcggcggtcacttgcgcgccctcgtcgcc
accgacatcgcggcccggggcatcgacgtcgagggggtcactcatgtgatcaacttcgag
ctgccgaacgacccggaaagttacgtccaccggatcggccgcacggcgcgcggcggagcc
gacggcatcgccctgtcgttttgcgatggcgaggaacgcggctatctgcgcagcatcgaa
aaaatcattcgccaaagcgtgacggtcgaagaagaccatccttttcattccgccgagatc
gccaacgatccgggattcggggcggcgaaaccgaaaaagagaggcggcttcaaaaaacgt
cgttccgacgcccgctctcagcaaaatgccggaaagccgtggcagaagggtaaaccctcc
acgcccagccgcaggtctaagaaagttgcctga
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