Varunaivibrio sulfuroxidans: P3M64_12675
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Entry
P3M64_12675 CDS
T08892
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vsu
Varunaivibrio sulfuroxidans
Pathway
vsu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vsu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P3M64_12675 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsu03021
]
P3M64_12675 (rpoC)
03400 DNA repair and recombination proteins [BR:
vsu03400
]
P3M64_12675 (rpoC)
Enzymes [BR:
vsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P3M64_12675 (rpoC)
Transcription machinery [BR:
vsu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P3M64_12675 (rpoC)
DNA repair and recombination proteins [BR:
vsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P3M64_12675 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
YnfE
Motif
Other DBs
NCBI-ProteinID:
WES30477
LinkDB
All DBs
Position
2713242..2717465
Genome browser
AA seq
1407 aa
AA seq
DB search
MNELMKVFGQVTGTQRFDHMKISIASPEQIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPTKDYECLCGKYKRMKYKGITCEKCGVEVTLQKVRRERMGHIDLASPVAHIWFMKSL
PSRIGLLTDMTLKDLERVLYFENYVVVEPGLTPMKLHELLSEEQYQNALDEYGEDAFQVG
IGAEAIREMLCAIDLETELETLKVELKETNSEAKRKKLVKRLKLVEAFIASNTRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLELYGMAPTIKAAKRMLEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPSSGKPIIVPSQDIILGLYYMTMMREGEKGEGMIFADQGEVQLALDT
GILSLHAKITARFQTVDSEGKPKIIRTETTPGRMILSELLPRHPKVPFELINQLMTKKEI
SSVIDVVYRHCGQKETVIFADRLMGIGFANACRAGISFGKDDMVIPPSKEKLVNETDEKV
KEYEQQYQDGLITQGEKYNKVVDAWAHCTDLVSDAMMKELSIDKPGVPINSVYMMAHSGA
RGSVAQMKQLAGMRGLMAKPSGEIIETPIIANFKEGLSVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDCIIYDEDCGTDLGVIARPIVQGGETISPISEQVLGRTAGEDVLH
PTGGEVLVAKGVLIDEEIAGRLEEAEVESMKIRSPLVCESKIGVCASCYGRDLARGTRVN
VGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGSEQSYAEALADAKARLENCTTVKNSD
GALIVMTRNAEVVLLDSQKRERARHRIPYGAKLMVADKAVVKRGDRLAEWDPYTLPIITE
KEGVVNYVDLLEGVTLIEQMDEATGISSKIVVDMKSLQPKAGDLKPRITLRDDAGELLAL
DNGLEARYFLSVDSVLSVENGQKVHAGDVLARIPRESAKTRDITGGLPRVAELFEARKPK
DHAIISEIEGRVEFGKDYKNKRRIIVVPTEGDGEPREYLIPKGKHISVQEGDYVKVGDPL
MDGNPVPHDILAVLGVEALAEYLVDEIQDVYRLQGVKINDKHIEVIARQMLQKVEITAPG
DTTYLVGELVDKIEFDITNAKLLEEGERPAEANPVLQGITKASLQTQSFISAASFQETTR
VLTEAAVSGKHDSLIGLKENVIVGRLIPAGTGSVMNRLRAVAAERDAELAPPPSAEVEVA
DEITAENLFAADVANEGANAGKSGLSD
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaattgatgaaggttttcgggcaggtcaccggaacgcagcgtttcgatcacatg
aaaatttcgatcgcctcgcccgagcaaatccgctcgtggtcgttcggcgaaatcaagaag
cccgagacgatcaactaccgcaccttcaagcccgagcgcgacggcttgttttgcgcccgc
atcttcggcccgacgaaggattacgagtgcctgtgcggtaagtataagcgcatgaaatac
aagggcatcacctgcgagaagtgcggcgtcgaggtgaccttgcaaaaggtccggcgcgag
cgtatgggccatatcgatctggcttcgccggtggcgcatatttggtttatgaagtctctg
ccttcgcgcatcggcctgcttaccgacatgaccttgaaggacttggagcgggttctctat
ttcgaaaactacgtcgtcgtcgagcccggcctgaccccgatgaagctccatgaattactc
tccgaggaacagtaccagaacgccctcgacgaatatggcgaggacgcctttcaggtcggc
atcggcgcggaggcgattcgcgaaatgctgtgcgcgatcgacttggaaacggaattggag
accctcaaggtcgaactcaaggaaaccaattccgaggccaagcgcaagaagctggtgaaa
cgcctgaagctggtcgaggcgtttatcgcctcgaacacccgccccgaatggatgatcctg
gaagtcgttccggtgatcccgcccgaattgcgcccgctggtgccgctcgacggcggccgt
ttcgcgacctccgaccttaacgatctgtaccgtcgtgtgatcaaccgtaacaaccgcttg
aagcgcttgatcgaactgcgcgcgccggaaatcatcgtgcgcaacgaaaaacgcatgctg
caggaatcggtggacgccctgttcgataacggtcgccgtggccgcgccatcaccggggcc
aacaagcgcccgttgaaatcgctgtccgacatgctgaagggcaagcagggccgcttccgt
cagaacttgctgggcaagcgcgtggattattcgggtcgctcggtgatcgtggtggggccg
gagttgaagctccatcagtgcggattgcctaagaaaatggcgctcgaactgttcaagccg
ttcatttattcgaagctcgaactgtacggcatggcgccgaccatcaaggccgccaagcgg
atgctcgaaaaagagcgccccgaggtgtgggatatcctggaagaagtgattcgcgaacac
ccggtgatgttgaaccgcgccccgacccttcaccgactgggcattcaggcgttcgaaccg
aagctgatcgaaggcaaggcgattcaattgcacccgctggtgtgcaccgcgttcaacgcc
gatttcgacggcgatcaaatggcggttcacgtgccgttgtcgctggaagcccagcttgag
gcccgcgtcctgatgatgtccaccaacaacatcctcagcccgtccagcggaaagccgatc
atcgtcccctcgcaggacatcatcctcgggctgtactacatgaccatgatgcgtgaaggc
gagaagggcgaaggcatgatcttcgccgatcagggcgaggtgcaattggccctcgatacc
ggtatcttgagtctgcacgccaagatcacggcgcgctttcaaacggtcgattccgagggt
aagccgaagatcatccgcaccgaaaccacgccgggccggatgattttgtcggagcttctg
ccccgtcaccccaaggtgccgttcgagctgatcaatcagctgatgacaaagaaggaaatt
tccagcgtcatcgacgtcgtctaccgccattgcggccagaaggaaacggtcattttcgcc
gatcgtctgatgggaatcggcttcgccaacgcgtgccgcgccgggatttcgttcggcaag
gacgatatggtgatcccgccctcgaaggaaaaactggtcaatgagaccgacgaaaaggtc
aaggaatacgagcagcaatatcaagacggcctgattacccagggcgaaaaatacaacaag
gtcgtcgatgcttgggcgcattgcaccgatttggtttccgacgccatgatgaaagagctg
tcgatcgacaaaccgggcgttccgatcaactcggtctacatgatggcgcactccggcgcc
cgtggctcggtggcgcagatgaagcagctcgccggcatgcgcggcctgatggccaagcca
tcgggcgagatcatcgaaacgccgattatcgccaacttcaaggaaggcctcagcgttctc
gaatacttcaattcgacccacggcgcgcgcaagggactcgccgacacggcgctgaagacc
gccaactcggggtacctcacgcgtcgcttggtcgatgtcgcccaggactgcattatttac
gatgaagattgcggcaccgaccttggcgtcatcgcccgcccgatcgttcaaggcggcgag
acgatctcgccgatttccgaacaggttctcggtcgtaccgcgggtgaagatgttctccac
ccgaccggtggcgaggtgctcgtcgccaagggcgttctcatcgacgaggaaatcgcgggt
cggcttgaagaggccgaagtggagagcatgaaaatccgctcgccgctggtctgcgaaagc
aagatcggcgtctgcgcctcgtgctatggccgcgatctggcgcggggcacgcgggtcaac
gtcggcgaggcggtcggcgtgatcgcggcgcagtcgatcggcgagccgggcacccagttg
accatgcgcaccttccacatcggcggcgcggcgcagcgcggttccgagcaatcctacgcc
gaagccctggccgacgccaaggcgcggctggagaactgcaccacggtgaaaaactccgac
ggagcgttgatcgtgatgacgcgcaatgccgaggtcgtcctgctcgacagccagaagcgc
gaacgggcgcgccatcgcattccttacggcgcgaagctgatggtcgccgacaaggcggtc
gtcaagcgcggcgaccgcttggcggaatgggatccctacaccctgccgatcatcaccgaa
aaggaaggcgtggtgaactacgtcgatcttctcgaaggggtcaccctgatcgagcaaatg
gacgaagccaccggtatttcgtccaagatcgtggtcgatatgaagtccctgcagcccaag
gccggcgatcttaagccgcgtattacgctgcgtgacgacgccggtgaattgctggccttg
gataacggcctggaagcacgctacttcctgtcggtcgattcggtgttatcggtggaaaac
ggccagaaggtccatgccggcgatgtgttggcgcgtattccccgcgaaagcgccaagacc
cgcgacattaccggcggtctgccgcgcgtcgccgagctgttcgaggcgcgcaagccgaaa
gaccatgcgatcatcagtgaaatcgaagggcgtgtcgaattcggcaaggattataaaaac
aagcggcggattatcgtcgttccgacagagggcgatggcgagcctcgggaataccttatt
cccaagggcaagcacatcagcgttcaggaaggcgactatgttaaggtcggcgaccccctg
atggatggcaaccccgtgcctcacgatattctggcggttctcggcgtcgaggcgctggcc
gaatatctggttgacgaaattcaggacgtctatcgtctgcagggcgttaagatcaacgat
aagcatatcgaagtgatcgcccggcaaatgttgcagaaagtcgaaatcacggcccccgga
gacaccacctatctggttggcgaattggtggacaagatcgaattcgacatcaccaatgcg
aagttgctcgaagaaggcgaacgtcccgccgaggcgaatcccgtgcttcagggtatcacc
aaggcgtcgttgcagacccagtcgttcatctccgccgcgtcgttccaggaaacgactcgg
gtgcttaccgaggccgcggtgtccggcaagcacgacagcttgatcgggctcaaggaaaac
gtcatcgtcgggcgcttgatcccggcgggtacggggtcggtgatgaaccgtctgcgtgcg
gtggcggccgagcgggacgccgaattggcgccaccgcccagcgccgaggtcgaggtcgcc
gacgagatcacggcggaaaacctgttcgccgcggatgtcgcgaacgagggcgccaacgct
ggaaaatcgggcctttccgactga
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integrated database retrieval system
