Vibrio syngnathi: K08M4_00470
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Entry
K08M4_00470 CDS
T09193
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy03420
Nucleotide excision repair
vsy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K08M4_00470 (uvrD)
03430 Mismatch repair
K08M4_00470 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsy03400
]
K08M4_00470 (uvrD)
Enzymes [BR:
vsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K08M4_00470 (uvrD)
DNA repair and recombination proteins [BR:
vsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K08M4_00470 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
K08M4_00470 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
PhoH
Motif
Other DBs
NCBI-ProteinID:
ARP36892
UniProt:
A0AA34XM47
LinkDB
All DBs
Position
1:46202..48376
Genome browser
AA seq
724 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSSSGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
IRLLRRLIKAQNLDEKQWPAKQASWWINGKKDEGLRPNHIDAYHDPITQTWLKIYSAYQE
ACDRAGLVDFAEILLRSHELLRDKKHIREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
DCRVMIVGDDDQSIYGWRGAKIENIQKFLDEFPGASTVRLEQNYRSTKTILQASNELISN
NTERMGKELWTDGNDGEPISVYSAYNELDEARFTVSKIKEWQEKGGALEDTAMLYRNNAQ
SRVLEEALIQGGLPYRIYGGMRFFERQEIRDALSYLRLMSNRSNDAAFERVVNTPTRGLG
DKTLETIRLAARDRGATMWQASIALIEEQVLPGRAAGALSRFIELINALEDDTIELRLHE
QTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEADEMSMLTAFLTHAA
LEAGEGQADEFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMEKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPASSGRF
SQTAVKENFNETGFSLGSRVKHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYAR
LEQL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatagatccttcgcttttactcgatggcctaaacgataaacaacgtgaggcggtcgca
gcacctttagaaaacctacttattctggcaggtgctggcagtggtaaaacgcgagtgttg
gtgcatcgcatcgcttggctgcaaagcgtagagcaagcatcgccgttctctatcatgtcg
gttaccttcaccaacaaagcggcagcagagatgcgtggtcgtattgaagagttgatgatg
ggtagctcgtcaggcatgtggaatggcaccttccatggtatctgtcaccgcatccttcgt
gctcactacctagatgcaaaactgccagaagatttccagattattgattctgatgatcag
attcgtttgctacgtcgcttaatcaaggcgcaaaatcttgatgaaaagcagtggcctgcc
aagcaagcttcttggtggatcaatggcaagaaagacgagggattacgcccaaatcacatc
gacgcctaccatgatccaataactcaaacgtggttaaagatctattctgcttaccaagaa
gcatgtgaccgtgctggcttggtcgactttgcggaaatcttgttgagatcgcatgaacta
ttgcgcgataagaaacacatccgagagcactaccaagctcgcttcaagcatatccttgtc
gacgaatttcaagataccaacaacatccaatacgcttggttacgtatgatggcgggcccg
gattgtcgcgtgatgatcgtgggtgatgatgaccaatctatctatggctggcgtggtgcc
aagattgaaaatattcagaagttcttggatgaattcccaggtgcttcaacggttcgactc
gaacaaaactaccgttcaaccaaaaccattctgcaggcgtcgaatgagcttatctcgaac
aacaccgaacgtatgggtaaagagctttggacggatggtaatgatggtgagcctatctct
gtttactcagcttataacgagttagatgaagcgcgtttcacggttagcaaaatcaaagag
tggcaagagaaaggcggtgcgttagaagataccgcgatgctttatcgtaataacgcccaa
tcgcgtgtgcttgaagaagctttgattcaaggtggtctaccttaccgaatctacggcggc
atgcgattcttcgagcgtcaggaaatcagagatgccttgagctacctgcgtttaatgagt
aaccgcagcaatgatgcggcattcgaacgtgtcgtcaatacgccaacgcgtggcctgggt
gataaaacgttagaaacgattcgtcttgcggcgcgtgaccgtggtgcaaccatgtggcaa
gccagtattgctctgatagaagagcaagtgcttccaggccgtgctgcgggtgcattgagc
cgcttcatcgagcttatcaatgcgcttgaagatgacacgatagaactgaggcttcatgag
caaaccgaccacgtgatcaaatcgtcgggcttgtttgcgatgtacgagcaagagaagggc
gagaagtcgaaggcacgtattgagaacttggaagaattagtaacggcaacgcgtcagttt
gaaaaaccagaagaagcggatgaaatgagcatgctaacagcattcttaactcatgcggct
ttggaagcgggtgaaggccaagctgatgagtttgatgatgcggttcagctcatgaccctg
cacagtgccaaaggcctagagttcccaatggtcttcatggtgggtgtggaagaaggtatg
ttcccaagccagatgtcagcagaagaagcagggcgcttagaagaagagcgtcgcctgtgt
tacgtaggcatgacgcgtgcgatggagaagctttatatcacttacgcagagatgcgtcgt
ttgtacggtcaagacaagtatcacaagccatctcgttttattcgtgagctaccagagaca
tgtctggatgaagtgcgtatgaaagcgcaagtgagccgccctgcaagcagtggtcgcttt
agtcaaaccgccgtgaaagagaactttaacgaaacaggctttagcttaggttctcgcgtt
aagcaccctaagtttggtgaaggtaccatcatcaacttcgagggaagtggcccacagagt
cgagttcaagttgcgtttaacggtgaagggattaagtggttagtaacggcttacgctcga
ttagagcagctttaa
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