Vibrio syngnathi: K08M4_00570
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Entry
K08M4_00570 CDS
T09193
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K08M4_00570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsy03019
]
K08M4_00570
Enzymes [BR:
vsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K08M4_00570
Messenger RNA biogenesis [BR:
vsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K08M4_00570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
SNF2-rel_dom
CMS1
Motif
Other DBs
NCBI-ProteinID:
ARP36902
UniProt:
A0AA34TLD8
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All DBs
Position
1:complement(59157..60467)
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AA seq
436 aa
AA seq
DB search
MKKTHITEQKFADLDLLPQVIEGLEKKGFDYCTPIQALAIPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVESTGIKAALAYG
GESYDKQLGKIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILE
QFTKGDVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFA
CEDYAINLPPIEEYIEHAIPMSDYDASALLEDLPAPMRLRTRNPQQRRSNNNGPRNGNRK
PNQNRRPRQPRHNKEA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgacttggatttacttccgcaagtc
attgaaggattggagaaaaaagggttcgattattgtacccctatccaagccttggcgatc
ccggtactgctcaccggccaagacattgcaggccaggcccaaacgggtactggtaaaacg
cttgcgtttctaactgctacttttaaccacctgctaaaaacacctgagcatgaagggcgt
aagcctaaccaaccacgtgcaattattatggcaccaacgcgtgaactcgcgattcagatc
tacaacgatgctgactctctggttgaaagcacgggtatcaaagcagcactcgcttacggt
ggcgaaagctacgacaagcagctaggtaagatcgaagaaggcgcagatatcttaattggt
actactggccgtatcatcgatttctacaagcaaaaggtatttaaccttaaccacattcaa
gctgttgtgcttgatgaagccgatcgtatgtttgatctgggctttattaaagacattcgc
ttcttgttccgccgtatgcctgagcctaaagatcgcctgaacatgctgttctctgcgacg
ctgtcttaccgtgtacaagagctggcgttcgagcacatgcacaacccagagcacgtggtt
gttgagcctgagcgtaaaacaggtcaccgcattcaagaagagctgttctacccttctaac
gaacataagatggctcttctacaaacgttaatcgaagaagaatggccagatcgcgcaatc
atcttcgctaacacgaagcacaaatgtgaatcagtttggggccacttggctgccgatggt
caccgtgtaggcctgctaactggtgatgttcctcagaagaaacgtgagaagattcttgag
cagttcaccaaaggtgatgttgaccttcttgtcgcaactgatgttgcagctcgtggccta
cacattcctcaagtaacacacgtattcaacttcgacctacctgatgattgcgaagattac
gttcaccgtatcggtcgtacaggtcgtgctggtgaaagcggtcactcgatcagctttgct
tgtgaagattacgcaatcaacttgccaccaatcgaagaatacattgagcatgctatccca
atgtctgactacgatgcttctgcactactagaagatctgccagcaccgatgcgcttacgt
acacgtaaccctcaacaacgccgctcgaacaacaatggcccacgcaacggtaaccgtaaa
ccaaaccagaaccgtcgcccacgccaaccgcgtcataacaaggaagcttag
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