Vibrio syngnathi: K08M4_00840
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Entry
K08M4_00840 CDS
T09193
Symbol
dapF
Name
(GenBank) Diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy00300
Lysine biosynthesis
vsy00470
D-Amino acid metabolism
vsy01100
Metabolic pathways
vsy01110
Biosynthesis of secondary metabolites
vsy01120
Microbial metabolism in diverse environments
vsy01230
Biosynthesis of amino acids
Module
vsy_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
K08M4_00840 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
K08M4_00840 (dapF)
Enzymes [BR:
vsy01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
K08M4_00840 (dapF)
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Gene cluster
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Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
ARP36920
UniProt:
A0AA34TL01
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Position
1:89774..90604
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AA seq
276 aa
AA seq
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MHFHFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDF
HYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEENDLITVNM
GIPEFEPGKIPFKAKQPEKTYILRTDVHTLFCGAVSMGNPHVVTVVDDVDTADVDTLGPL
LESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQGLLAENV
KVRLPGGDLHISWQGPGKPLFMTGPATHVFDGQLSC
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcacttccacttttctaaaatgcatggtttgggcaatgatttcatggtcgtggactgc
attactcaaaatattttcttttctccagatttgattcgtcgtttggcggatcgtcacact
ggtgtgggtttcgatcagctacttgtcgttgaagctccctatgaccctgaaactgacttc
cattaccgcatatttaatgcagatggcagtgaagtggagcagtgtggtaatggtgcgcgt
tgttttgctcgatttgttcgtatgaaaggcttaacgaataagtacagtatcaacgtgagc
accaagaaaggaaaaatggttctcaaaattgaagagaatgatttaatcactgtcaatatg
ggtattcctgagttcgaaccgggcaagattccatttaaggcgaagcagccagaaaagacg
tatatcctaagaacggatgtacacaccttgttctgtggtgctgttagcatgggtaaccca
catgtggttaccgtggttgatgacgtcgataccgcagatgtggataccttaggtccactg
cttgaatctcatgaacgttttcctgaacgtgttaatgctggctttatgcaggtggttaac
cgtgaagaagtccgcttgcgtgtctatgaacgcggtgcgggtgaaactcaggcgtgtggt
agtggtgcatgtggcgcagttgccgttggtattactcaaggcttactggctgagaatgtg
aaggttcgtctacctggtggtgacttacacattagctggcaaggccctgggaaacctctg
tttatgactggtccagcaacgcatgtgtttgatggtcaactttcttgctaa
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