Vibrio syngnathi: K08M4_00960
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Entry
K08M4_00960 CDS
T09193
Name
(GenBank) biofilm formation regulator HmsP
KO
K07181
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
K08M4_00960
Enzymes [BR:
vsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
K08M4_00960
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Gene cluster
GFIT
Motif
Pfam:
EAL
HDOD
DUF2863
Motif
Other DBs
NCBI-ProteinID:
ARP36932
UniProt:
A0AA34TLG0
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Position
1:103977..105197
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AA seq
406 aa
AA seq
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MTATYVARQPILNRNKNTLGYELLFRDGDRNAYPAHIESNRATYRLIVENFLSVGLNPSI
PSSRCFINFPYQSLIRRLPMSLPKDKVVVEILETCQPTDELLEVIKELYQAGYMIALDDF
TSTPEWERFLQYTHIVKLDIMQMGLDAACELVKKHEGKKYSFLAERVETEQEFQQAKEAG
FKFFQGYFFSKPEIIKTKYISPEQVIAMELFQEVCKPDVDFQRVESIVAKDIALSYKLLR
FVNTMSPRLEVTISSFRQALVYLGQEKLKMFVSLAVASYVSDKKPKELYGLSLQRAQFCQ
RMSRYQVFAGHTEQAFMIGLFSLLDALLDLSLENLVEQLPLCKSIKVALLRREGPYGTLL
ALEESFEHADWQQMDEHCAHLGLSVEQVKTELTEARRWSHNVTNQL
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctacgtacgttgctcgacaacctatcttaaaccgtaacaagaacacgcttggt
tatgagctgctgtttcgtgacggtgataggaatgcctaccccgcgcatattgagtctaat
cgagcaacgtatcgcctgatcgttgaaaacttcttgtccgttgggcttaacccttcgatc
ccatcttcacgctgctttattaattttccgtatcaaagcttgattcgtcgtcttccaatg
agcttaccgaaagataaggtcgtagttgagattcttgaaacttgccaaccgaccgatgag
ctattagaggtaattaaagagctttatcaagcagggtatatgattgccctagatgacttt
acttcgacacctgagtgggaacgtttccttcaatatacgcatattgttaagcttgatatc
atgcagatggggttggatgcggcgtgtgagttagtcaaaaagcacgaagggaagaagtat
agttttcttgctgagcgggttgaaacggaacaagagttccaacaagcgaaagaagcaggt
tttaagtttttccaaggctatttctttagtaagccagaaatcataaagactaagtatatt
agcccagagcaagtgatagcgatggagctattccaggaagtctgtaagcctgatgtcgac
ttccaacgtgtcgaaagcatcgtcgcgaaagacattgccttatcttataaactactgcgc
tttgtgaacactatgtcaccccgccttgaggtcaccatctcttcatttcgtcaggccttg
gtttatttagggcaagagaaactgaaaatgtttgtctcgctagcagtagcgtcttatgtc
tctgataaaaagcccaaagaactgtatggcctgtctttgcagcgtgcacagttttgccag
cgcatgtctcgttaccaggtatttgcagggcacactgagcaggcgtttatgattggtttg
ttctcgttgcttgatgcgctgctcgacttgtcgttagagaatttagttgagcaactgcct
ttgtgtaaaagtatcaaggtggctctgctacgtagagaagggccatatggaaccttgctg
gcccttgaagagagctttgaacatgccgattggcagcagatggatgagcactgtgctcat
ttaggattgagtgtggaacaggttaaaactgagctcaccgaagctcgacgctggagtcat
aacgtaaccaatcagctctga
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