Vibrio syngnathi: K08M4_01610
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Entry
K08M4_01610 CDS
T09193
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K08M4_01610 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsy03021
]
K08M4_01610 (rpoB)
03400 DNA repair and recombination proteins [BR:
vsy03400
]
K08M4_01610 (rpoB)
Enzymes [BR:
vsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K08M4_01610 (rpoB)
Transcription machinery [BR:
vsy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K08M4_01610 (rpoB)
DNA repair and recombination proteins [BR:
vsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K08M4_01610 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
DUF7073
Motif
Other DBs
NCBI-ProteinID:
ARP36982
UniProt:
A0AA34XM79
LinkDB
All DBs
Position
1:166831..170859
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDRDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALGKSTEEILDLFFDKVNFEVKDQTLLME
LVPDRLRGETASFDIESNGKTYVETGRRVTARHIRQLEKDGVEHIEVPVEYIVEKIAAKD
YINEATGEIIVGANQEISLEALANLSQAGHKTLEVLFTNDLDHGPFMSDTLRADSTVDRI
SALVEIYRMMRPGEPPTKEAAESLFESLFFSEDRYDLSTVGRMKFNSSIEREEEEERGTL
DESDIIEVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNDYGFLETPYRRVVDGVVT
EEVDYLSAIQEGQFVIAQANTILTEEGTFADELITARQKGESGLHPRDHVDYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERNIAVDSGVTAVAKR
GGQVQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTVLPGEPVARG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKAVLLSGGYSEAKLDTIGRKQWLEQVLEDDALQTQLEQLAEQWDE
LKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELHK
FREFLQKVYDLGDTRQKVDIAELSDDQVRTLIKNLRGGLPIATPVFDGASESLIKELLKL
GDLPESGQLKLFDGRTGDSFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggattttggtactcgtccacaa
gttttggacattccatacctgttatcgatccagcttgattctttcgataaattcatcgaa
caggatccagaaggtcaatacggtcttgaagctgctttccgttctgtatttccaattcag
agctacaacggcaattctgagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgcggtgttacttactcaaagccactacgcgtaaaacta
cgtctagttatctttgatcgagatgcaccagcaggtactgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgcttatgacagacaatggtactttcgtaattaatggt
accgagagagttatcgtatcccagctgcaccgaagcccaggcgtgttcttcgacagtgat
aagggtaagacccactcatcaggtaaagttctttataacgcacgtgtaattccttaccgt
ggctcatggttagactttgagttcgatcctaaggataacttattcgtacgtatcgaccgt
cgtcgtaagctaccagcatcgattattcttcgtgcacttggtaaatcgactgaagagatc
ctagatctgttcttcgacaaggtgaacttcgaagttaaagaccaaactctacttatggag
ttggttcctgatcgtctacgtggtgaaactgcgtcattcgacatcgaatcaaacggtaag
acttacgttgagactggtcgtcgtgtaactgctcgccatatccgtcaacttgaaaaagat
ggcgttgagcacatcgaagtaccagtagagtacatcgttgaaaagattgctgcgaaagat
tacatcaacgaagcaactggcgagatcatcgttggcgcaaaccaagagattagcctagaa
gcacttgctaacctgtctcaagcaggtcacaagactctagaagtgctgttcacgaatgac
ctagaccatggtccattcatgtcagacactctacgtgcggatagcacagtagatcgcatc
tctgcattggtagaaatctaccgcatgatgcgccctggcgagccaccaacgaaagaagct
gcagaatcattgttcgaaagcctattcttctctgaagatcgttacgacctatcaactgta
ggccgtatgaaattcaacagctctatcgagcgtgaagaagaagaagagcgcggtactctg
gatgaatcagacatcatcgaagtgatgaagaaactgattggtatccgtaacggtattggt
gaagtggacgatatcgaccaccttggcaaccgtcgtatccgttctgtaggtgaaatggca
gaaaaccaattccgtgttggtctagttcgtgtagaacgtgccgttaaagaacgtctaagc
cttggtgaccttgatgcaatcatgcctcaagatcttatcaacgctaagccgatctctgct
gcagttaaagaattctttggctcttcacagctttcacagtttatggaccaaaacaaccca
ttgtcagaagttacgcacaagcgtcgtatctctgctttaggtcctggtggtcttactcgt
gagcgcgcaggcttcgaagtacgtgacgttcacgtaactcactacggtcgtctatgtccg
atcgaaacgcctgaaggtccaaacatcggtctaattaactcgctatctgcgtttgcacgt
tgtaacgattacggtttcctagaaactccgtaccgtcgtgtagtagatggtgtagtaaca
gaagaagttgattacctgtctgcaatccaggaaggtcaattcgtaatcgcgcaagcaaat
accattcttactgaagaaggtacttttgcagatgagctaatcacagctcgtcaaaaaggt
gaatctggtcttcacccacgcgatcacgttgactacatggacgttgcgacaaaccaagta
gtatctatcgctgcttcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgccaacatgcaacgtcaagctgtaccaacacttagagctgataagcctctagta
ggtacgggtatcgaacgtaacatcgcagttgactctggtgttacagcggttgctaaacgt
ggtggtcaagttcagtctgttgacgcttctcgtatcgtagttaaggttaacgaagatgaa
ttggtacctggcgaagctggtatcgatatctacaacctgactaagtacacgcgttcgaac
caaaacacatgtattaaccaacgtccaactgtacttcctggtgaaccagttgcacgcggc
gatgttcttgctgacggtccttcaacagaccttggtgaactagctcttggccaaaacatg
cgtatcgcattcatgccttggaacggttacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgtttcacgacaatccacattcaagaactatcttgtgtggct
cgtgatactaagctgggttctgaagagatcacagctgatattccaaacgtaggtgagtct
gctctgtctaaactagacgagtcaggtatcgtttacattggtgctgaagtgaagggtggc
gacatcctagttggtaaagtaacccctaaaggtgaaactcaactgactcctgaagagaag
ctactacgtgctatcttcggtgagaaagcatctgatgttaaagatacttctctacgtgta
ccaaactctgtttcgggtactatcatcgatgtacaagtcttcactcgcgatggcgtagag
aaagacaaacgtgcacttgaaatcgaacagatgcagcttaaagaagctaagaaagatcta
actgaagagttccaaattcttgagggcggccttcttaaccgtgttaaagctgtacttctg
tctggtggttactctgaagctaagcttgatacgatcggtcgtaagcaatggctagagcaa
gttctagaagacgatgcgctacaaacacagcttgagcaacttgctgagcagtgggatgag
ctaaaagcagacttcgataagaagtttgaaactaagcgtcgtaaaatcactcaaggtgat
gatctagcgcctggcgttcttaagattgttaaagtttacctagcggttaaacgtcgtatc
cagcctggtgataagatggccggtcgtcacggtaacaaaggtgtaatctctaagattaac
cctgttgaagacatgccatacgatgagaaaggtcagcctgtagacatcgtacttaacccg
ctgggtgtaccatcgcgtatgaacatcggtcagatcctagaagttcacttaggtttggct
gcgaaaggtatcggtgacaagatcaaccaaatggttaaggaacaacaagaactgcataag
ttccgtgagttcctacagaaggtttatgatcttggtgatactcgtcagaaagttgatatt
gctgaactgtctgatgatcaagttcgtacactgatcaagaacctacgtggcggtctaccg
attgctactcctgtgttcgacggtgcttctgagtctctaatcaaagaactacttaaactg
ggtgatctgccagaatctggtcagcttaaactgtttgatggtcgtactggtgattcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccacttggttgatgac
aagatgcatgctcgttcaactggttcttacagcctagtaactcagcaaccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcatatactctacaagaaatgctaacagttaagtcggatgacgttaacggccgt
actaagatgtacaagaacatcgtagatggtaaccatagcatggaacctggcatgccagag
tcgttcaacgtactgttgaaagagattcgctcgctaggtatcaacatcgagctagaagac
gaagagtaa
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integrated database retrieval system
