Vibrio syngnathi: K08M4_01620
Help
Entry
K08M4_01620 CDS
T09193
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K08M4_01620 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsy03021
]
K08M4_01620 (rpoC)
03400 DNA repair and recombination proteins [BR:
vsy03400
]
K08M4_01620 (rpoC)
Enzymes [BR:
vsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K08M4_01620 (rpoC)
Transcription machinery [BR:
vsy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K08M4_01620 (rpoC)
DNA repair and recombination proteins [BR:
vsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K08M4_01620 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ARP36983
UniProt:
A0AA34TMP5
LinkDB
All DBs
Position
1:170950..175152
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDTIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLSTMDLHQEVEEMREELETTNSETKRKKVTKRLKLVEAFISSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGMATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLAGPAEAEKAYRTK
TAELHARVKVRITETVVDEDGNSTTNTGLVDTTVGRAMLWQIVPAGLPYSIVNQKLGKKQ
ISTLLNECYRKLGLKDTVVFADQIMYAGFAYAALSGVSVGINDMVVPQAKYDEIESAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMDNLSSETVINRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGIDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEDNSVDSMKVRSVVTCDADFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKTTGTVKL
HNAKFVVNKDKKLVITSRASEMTIIDEFGRTKEKHKLPYGSMLTKGDNAAVTAGEVVANW
EAHTMPIITEVAGRIQFVDMIDGITVSRNTDDLTGLSSSEVTDAAARPAAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNIEDGAEVGIGDTLSRIPQKSSGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITREGGDAYEEMIPKHRQLNVFEG
EKIERGDVIADGPETPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHSGDSPFLPGEQVEYHNVKIANRKLEAEGKELVRFERDLLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQKQREEEQEGPS
AEQATDNLAALLNAGFSSEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacacgatccgttcgtggtcttttggtgaagttaaaaag
ccagaaacaattaactatcgtacgttcaaacctgaacgtgatggtctgttctgtgcacgt
atttttggtccagttaaagactacgaatgtctttgtggcaaatacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcttcaccagttgctcacatctggttcctaaaatcacta
ccgtctcgtatcggtctactaatggatatccctctgcgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaactgaaccgggtatgactgatctagaaaaatctcagatgctt
actgaagaagagtatctggatcgtctagaagagtggggtgacgaattcactgctaagatg
ggtgctgaagcgatcaaagatctgctttcaacaatggaccttcatcaagaagtggaagaa
atgcgcgaagagttggaaacaactaactctgaaactaagcgtaagaaagttactaagcgt
ttgaagctagttgaagcgttcatttcgtcaggcaacaagcctgagtggatgatcctaact
gtacttccagtgctaccgccagatctgcgtcctctagtaccactagatggcggtcgtttt
gcgacatctgatctgaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagcggctccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcccttctagataacggtcgtcgcggtcgtgcgatcacgggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagttggtccatac
cttcgtctacatcagtgtggtcttcctaagaagatggcacttgagctatttaagccgttc
atctacagcaagctagaaactcgtggcatggctacgacaatcaaagctgctaagaaaatg
gtagagcgcgaagaagcgatcgtttgggatattctagacgaagtgatccgtgaacaccca
gtactgcttaaccgtgcacctacacttcaccgtctaggtatccaagcgtttgaaccagta
ctaatcgaaggtaaagcgattcagcttcacccactagtgtgtgcggcatacaacgccgac
ttcgatggtgaccaaatggctgtacacgtgcctctaactctagaagcacagcttgaagct
cgtaccctaatgatgtcgacgaataacattctgtcgccagcatctggtgatccaatcatc
gtaccttctcaggacgttgtattgggtctttactacatgacacgtgacaagatcaacgtg
aaaggtgaaggtatgtaccttgctggccctgctgaggctgaaaaggcataccgtactaag
actgctgagctacacgctcgcgttaaagtacgtatcactgaaacagtagtagacgaagac
ggcaatagcacaacgaatactggcctagtagatacgactgtaggtcgtgcaatgctatgg
cagatcgttccagctggccttccgtacagcatcgttaaccaaaagttaggtaagaagcag
atctctactcttcttaacgagtgttaccgtaagcttggtctaaaagatacagtagtattt
gctgaccaaatcatgtacgcaggtttcgcatacgcggcactttctggtgtttctgtaggt
atcaacgatatggttgttcctcaagcgaaatacgatgaaattgaatctgctgaagaagaa
gttcgtgaaatccaagagcaattccaatctggtcttgttactgcgggtgagcgttacaac
aaagttatcgatatctgggcatctacgaatgaccgcgttgcgaaagcaatgatggataac
ctatcttctgaaacagttattaaccgtgatggcgaagaagaacagcaagaatcgttcaac
agtatctacatgatggccgactcgggcgcacgtggttctgcagctcagattcgtcagcta
gcaggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcaca
gcgaactttaaagaaggtctaaacgtccttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacagcactgaaaacagcaaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgtagtacacgaacatgattgtggcacgcatgaaggtatc
gacatgatgcctcacatcgaaggtggtgacgttaaagttgcactttctgagcttgctctt
ggtcgtgtagtagctgaagacgttcttaagcctggtactgaagatgtactgattccacgt
aatactctgattgatgagaagtggtgtcaaatcatggaagacaactctgtagacagcatg
aaagtgcgctcagttgttacctgtgatgcagacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagttggtgttatcgctgca
caatctatcggtgaaccgggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatctactgcagcagcagagaacagcatccaagctaagacaactggtactgtgaaactt
cacaatgctaagttcgtagtgaacaaagataagaaactggttatcacttctcgtgcatct
gagatgacgattattgatgaattcggccgtacgaaagagaagcacaaacttccttacggt
tcgatgctaaccaaaggcgacaacgcagcagttactgctggtgaagttgtagctaactgg
gaagcgcatactatgccaatcatcactgaagtggcaggtcgtatccaattcgtagatatg
atcgatggtattacagtttctcgtaacactgacgatctaacgggtctttcttcaagtgaa
gtgacagacgcagcagctcgcccagcagcaggtaaagatatgcgtccagctatcaaactt
gttgatgagcaaggtaacgacgtaatgatccctggtactgatatgccagctcactacttc
ctaccaggcaaagcgattgtaaacatcgaagatggcgctgaagttggcattggtgacaca
ctatctcgtatccctcaaaaatcgagcggaaacaaagatatcaccggtggtctaccacgc
gtagctgacctattcgaagctcgtaagcctaaagagcctgcgatccttgctgagcacaca
ggtactgtgtctttcggtaaagaaacgaaaggtaagcgtcgtctagtaatcactcgtgaa
ggcggtgacgcttacgaagagatgattcctaagcatcgtcaattgaacgtgttcgaaggt
gagaagattgaacgtggtgatgtaatcgccgacggtcctgaaactccacacgatatcttg
cgtctacgtggtatccacgcagtaactcagtacatcgcgaacgaagttcaagaagtttac
cgcttacaaggcgtaaagattaacgataagcacatcgagactatcgttcgtcaaatgcta
cgtaagtgtacaatcactcattctggtgactctccgttcctacctggcgaacaagttgag
taccacaatgttaagattgctaaccgtaagctagaagctgaaggtaaagaactagtacgt
ttcgaacgtgatctactaggtattactaaagcatctcttgcaactgagtcattcatctca
gctgcatcgttccaagaaacgactcgcgtactaacagaagctgcggtttctggtaagcgt
gatgaccttcgcggtctgaaagagaacgtaattgttggtcgtctgatcccagctggtact
ggtttcgcataccaccaagagcgtcaaaagcaacgtgaagaagagcaagaaggtccttca
gctgaacaagctactgacaatctagcagcacttctaaacgctggtttctcttcagaagag
taa
DBGET
integrated database retrieval system
