Vibrio syngnathi: K08M4_02240
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Entry
K08M4_02240 CDS
T09193
Name
(GenBank) transcription-repair coupling factor
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K08M4_02240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsy03400
]
K08M4_02240
Enzymes [BR:
vsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K08M4_02240
DNA repair and recombination proteins [BR:
vsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K08M4_02240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
ResIII
Helicase_C
Zn_ribbon_PriA
AAA_30
WHD_PriA
AAA_19
Zn_ribbon_6
TrwB_AAD_bind
AAA_11
Zot
HTH_27
PIF1
DUF1258
Motif
Other DBs
NCBI-ProteinID:
ARP37045
UniProt:
A0AA34TM69
LinkDB
All DBs
Position
1:complement(242581..244782)
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AA seq
733 aa
AA seq
DB search
MRPMIARVALPVPLDKQFDYKIPSHLFPIIGGRVSVPFGRQTLTGIVTALVNESEFELDK
LKPIKALLDNQPVWPESVYSLLVWCSQFYQYPLGETLANALPSALRKGKAADFATLVEWQ
LTPSGRDQLMQGFGRAVKQAKVMHMLEHGPVPHQKFIDEEVGSAVLKTLEEKGWVESVEK
KPKRHAWPVDLENDQDKPKLNEEQAIAIATVNSQTDFGCFLLEGVTGSGKTEVYLNMIKP
ILDQGKQALVLVPEIGLTPQTINRFKRRFNVPVEVIHSGLNDSERLNAWLSARDKIAGIV
IGTRSALFTPFADLGIIIVDEEHDASYKQQDSLRYHARDVAIMRAHKAQIPVVLGSATPA
FETLHNAQIGKYSYLTLTSRAGVALPTTNKVLDVKGEYLESGLSASLIAEMQRHLKAGNQ
VMLFLNRRGFSPALMCHDCGWTAECKRCDAYYTYHQYSNEMRCHHCGSQQHIVHHCQGCG
SANLVTVGVGTEQLEAQLGQLFPEYKTIRIDRDSTRRKGSLESALESIRKGEYQILIGTQ
MLAKGHHFPDVTLVALLDVDASLYSSDFRASERLAQLFTQVAGRAGRASKPGEVILQTHH
PEHGLLQALLHKDYNHFAQTALAERKQAMLPPYTFMTLFRAEANDTRLVEEFLRQVRHTL
ESHPLFDQYCMVLGPTPAPLAKRAGKSRWQLILQTQTRSMMQKLLMSAKPAINMLPAAKK
VRWSLDIEPQDLS
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccaatgattgcccgcgtggcactgccggttccactagacaaacagttcgattac
aagattcctagccacctattccctataattggcggacgagtttctgtgccttttggacga
caaaccttaacaggtattgttacggctctggttaacgaatctgaattcgaattagacaaa
ctcaagcccattaaagccttactagacaaccaacccgtttggccggaatcggtctactca
ctcttggtatggtgtagccagttctatcagtatccactaggtgaaaccttggccaacgca
ctaccaagcgccttacgaaaaggcaaagctgcagacttcgcgacgcttgttgaatggcaa
ttgaccccatcaggcagagatcaactgatgcagggcttcggccgagcggtcaaacaagcc
aaagtgatgcacatgcttgagcacggcccggttcctcatcagaagttcatcgatgaagag
gtgggcagcgcggtacttaagacgttggaagagaagggctgggttgaatcggtagagaaa
aaaccaaaacgccatgcatggccggtggatctcgaaaacgatcaagataagccaaaactc
aatgaagaacaggctatagcaatagcaacggtaaatagccaaaccgactttggttgcttc
ttgttagagggggttactggctcaggtaagactgaagtctatctgaatatgatcaaaccg
attctcgaccaaggtaaacaagcgttagtgttagtaccggagatcggcctaacccctcaa
acgattaatcgctttaagcgtcgttttaatgtgcctgttgaggtgattcactctggatta
aacgattctgaacgattgaatgcttggttatcagcacgtgacaaaatagcgggcattgtg
attggtacgcgctcggctctgttcacgccttttgccgatctgggcatcattattgtcgat
gaagaacatgatgcttcatataaacagcaagacagcctccgctaccacgctcgtgatgtg
gcgatcatgcgagctcataaggcgcaaattccggttgtgttaggctctgctaccccagcc
tttgagacgctgcacaacgcccaaataggtaaatacagctacctcaccctcacctcgcgc
gcaggtgtcgcactaccaaccaccaataaagtgttagatgttaagggtgaatatctagaa
agtggcttgtctgcgtctttgattgctgaaatgcaaagacacctcaaagcaggcaaccaa
gtgatgttgttcctcaaccgccgagggttttctcccgcactgatgtgtcacgattgtggt
tggacagccgaatgtaagcgttgtgatgcttactacacctatcaccaatacagtaatgag
atgcgctgccaccattgtggctcgcagcagcatattgtgcatcattgccaagggtgtggt
tcagcgaacttagtgacagtaggtgtaggtaccgaacagttggaagctcaacttggccag
ctatttccggaatacaaaaccattcgtattgaccgagacagcactcgccgtaaaggcagc
ttagaaagcgcgttagagtcgattcgcaaaggtgaataccaaattcttatcggcacacag
atgcttgctaaagggcaccacttccctgatgtcacacttgtggcattactggatgttgat
gcctctttatatagcagtgacttccgcgcctctgaacgattggctcaattgtttactcaa
gtcgcaggtcgagcaggacgagccagtaagcctggtgaggttatcttacaaactcaccat
ccagaacatggcttattacaagcgttgctgcacaaagactataaccactttgcccaaacc
gcattggcagagcgtaaacaagcgatgttgccaccttataccttcatgactctgtttaga
gcggaagccaatgacacacgtttggtggaagagttcttgcgtcaagtgcgccacacattg
gaatcgcatccgttatttgaccaatattgcatggtgctcggcccaacccctgcaccactg
gccaagcgagccggcaagtctcgttggcagcttattctacaaacacagactcgctcgatg
atgcagaagctattaatgagcgccaagccagcaattaatatgttacctgctgcgaaaaaa
gtccgttggtcactcgatattgagccgcaagatctgagctaa
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