Vibrio syngnathi: K08M4_04910
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Entry
K08M4_04910 CDS
T09193
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vsy
Vibrio syngnathi
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vsy03009
]
K08M4_04910 (rlmD)
Enzymes [BR:
vsy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
K08M4_04910 (rlmD)
Ribosome biogenesis [BR:
vsy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K08M4_04910 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_11
MTS
PCMT
Methyltr_RsmB-F
RrnaAD
DREV
Methyltransf_15
Methyltransf_23
Methyltransf_4
TPMT
Wtap
Motif
Other DBs
NCBI-ProteinID:
ARP37286
UniProt:
A0AA34TLU7
LinkDB
All DBs
Position
1:496307..497626
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AA seq
439 aa
AA seq
DB search
MARFFQPKKKTQLETKHQSVLVERMDHNGAGIAYQKNKPVFIDGALPGEKVVIQLTESKS
KFSRAKLIKLLQPSELRLKPFCKHFNQCGGCHLQHLGYSSQVEHKSQSLTHLMSKYQTAN
TEVVEPIVGDETGYRRRARISLFVDKKTQQLQFGFRKKQSKQIENITDCAVLDPRLNVLL
PKLKSLLNTFSNLTSLGHVELVIGDTGPVMVLRHLKPLVEKDEQSLIELAHAEGATLYSM
PETDKLVRLVGDAPAYSETGVTLPFEPNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDL
FCGLGNFSLPIAQQSAFVVGVEGVDEMVQQATSNAALNQLSNTEFYQANLEEDLSSQLWA
KEKFDKVLLDPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGM
LDMFPHTSHLESMALFIKA
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcacgttttttccaaccaaaaaagaaaactcaactcgagaccaagcatcaatcggtt
ttggttgaacgaatggatcacaatggcgctggcatcgcttatcagaagaacaaacccgtt
ttcattgatggcgcattgcccggtgagaaggtggttattcaacttactgagagcaaaagt
aagttttcgcgagcaaaactcatcaaattacttcaaccgagtgaactgcgtttaaagcca
ttttgtaagcactttaatcagtgtggtggctgccatcttcagcatctcggttactcatct
caggttgagcataaatcacaatctttgacgcacctgatgagcaaataccaaacggctaac
accgaagttgttgaaccgattgtgggtgatgaaactggctatcgtcgtcgcgcgcgtatc
agtctatttgttgataagaagacacagcagcttcagtttggtttccgtaagaaacaaagt
aaacagattgaaaacatcaccgactgcgcggtgcttgaccctcgccttaatgtactgctg
ccaaaactgaaaagtttactgaatactttcagcaaccttacgtctttaggacacgttgaa
ttagtgattggggatactggccctgttatggtgctgcgtcaccttaagcctttggttgaa
aaagatgagcaatctttgattgagttggctcatgcagaaggcgctacgctgtactcgatg
ccagaaaccgataagttggttcgtttggtcggggacgcaccagcttatagcgaaaccggt
gtgaccttaccttttgagccaaaccactttatacaagtgaaccagaaagtgaaccagcag
atggttgctcaagcgattgagtggttagagcctcaagcggatgaacgtgtgcttgacctg
ttttgtgggctaggcaatttcagtttgcctatcgcacaacaatcggcgtttgtcgttggt
gtggaaggtgttgatgaaatggttcaacaagcaacatctaatgcggcgttaaaccaatta
agcaatacggagttttaccaagcgaacctcgaagaagatttatcttcacagctttgggca
aaagagaaattcgataaagtattacttgacccagcacgcgctggagcgagtgggatcgta
gatcaaatttcagcgttaggagcgaagcgtgtggtttatgtttcgtgtaatcctgctact
ctagcgagagattctgagagtttagaaaaacaaggctatcaattagccaaacttggtatg
ttggatatgttcccccataccagtcatctagaatcgatggctctctttatcaaggcttag
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