Vibrio syngnathi: K08M4_04990
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Entry
K08M4_04990 CDS
T09193
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
vsy
Vibrio syngnathi
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsy03016
]
K08M4_04990 (truD)
Enzymes [BR:
vsy01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
K08M4_04990 (truD)
Transfer RNA biogenesis [BR:
vsy03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
K08M4_04990 (truD)
Prokaryotic type
K08M4_04990 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ARP37294
UniProt:
A0AA34XML6
LinkDB
All DBs
Position
1:506385..507431
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AA seq
348 aa
AA seq
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MSDILSSLAYLNGKPTAKAKLKAKAEHFVVNEDLGFEFTGEGEHLMVRIRKTGENTSFVA
NELAKACGVKSKDVSWAGLKDRHAVTEQWLSVHLPKGEPDFSAFLAQYPSIEILATARHN
KKLRPGDLVGNQFELTLSEVTDCEDVVKRLEKVAQVGVPNYFGAQRFGNEGNNLSEARRW
GRENVRTRNQNKRSLYLSAARSWIYNLILSDRIEQDAFASALVGDIVVKDGAQLAVTADN
IETVNQDIVNGSAFITVALAGDNALPTTDVSQALEQKHLDAEPDLMALICGNRMRHDRRE
ASLKPMGLAWEVNEDNVTLKFSLDAGCFATAIVRELVEEVHVERTYEQ
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatattttatcttcattggcttatctaaacggtaaaccaactgcgaaagcaaaa
ctaaaagcaaaagccgaacactttgtcgttaatgaagacctaggttttgagttcactggt
gaaggcgaacaccttatggttcgtattcgcaaaacgggtgagaacacgagctttgtagca
aacgagctggctaaagcgtgtggtgttaagtcgaaagacgtgagctgggctggcttgaaa
gaccgtcatgctgtgacagaacagtggttgagcgtgcatctaccaaaaggtgaacctgat
ttttctgcttttcttgcacaatacccaagcattgagattttggcgacagcacgccacaac
aaaaagttacgtccaggcgatttagttggcaaccaattcgagctaactttgtctgaagta
acggactgtgaggatgtggtaaagcgtttggaaaaagttgctcaagtgggcgtgccaaat
tattttggtgctcagaggtttggtaatgaaggtaacaacttatctgaagctcgtcgttgg
gggcgtgaaaacgttcgtacgcgtaatcaaaataagcgcagcttgtatctctctgctgct
cgttcttggatctacaacttaatcctttctgatcgtattgagcaagatgcgtttgcgtcg
gcattggttggcgatatcgtcgttaaagacggcgcgcaattagcggtgacggcagacaat
atcgaaaccgtaaatcaagacatcgtgaacggttctgcgtttattaccgttgctttagct
ggagataatgcgttaccgacgactgatgtatctcaagctctagagcagaaacaccttgat
gctgaaccggatctaatggcgcttatttgtggtaaccgtatgcgccatgatcgccgtgaa
gcgtcgctgaagccgatgggcttagcgtgggaagtaaacgaagacaatgtcactcttaaa
ttctctctggatgcaggctgtttcgcaaccgctatcgttcgtgagctagttgaagaagta
cacgtagaaagaacctacgagcaataa
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